2011.06.10
Attending: Andy, Josh, Simon
No agenda
- Josh wants to go over CLI tools
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Simon liked the meeting.
- Andy: Worthwhile session
- Simon: Few weeks earlier would have also been useful.
- See that section of contributors
Andy
- Trying to get the data
-
will try to write out their workflow
- Cleaning from the genetic side
Josh
-
schema files missing types
- Andy: in the future will have all the types
- Genetics won't have types
- Josh: Matrix like in nature?
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Andy:
- adding to demo would be IP
-
queries various columns based on conditions
- specific bp range in a date range (symbolic names)
- subset of columns
- just as SQL? (case collisions? Not really.)
- code completion?
-
webpage
- auditlog as a query
- don't want the system auto-generating more auditlog entries.
-
joins?
- No. Must do it in-memory.
- Add exporting to CSV (with proper delimiter)
-
schema files missing types
Andy:
-
Workflow meeting was taking most of recent time
- Need to do some transcribing.
- Away from next week to start of July.
- Continue with import / export
-
Will load sample genetic data early next week.
- Not the final data, but is representative.
- Josh: perhaps plink to hdf5 converter?
-
Not sure if we want to store plink data in OMERO
- Do we gain anything?
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Josh: eventually with map/reduce it will beneficial to read it in
- and copy chunks to the cluster.
-
Workflow meeting was taking most of recent time
Simon
- Starting Monday to work on a web demo
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First thing Andy works for?
- Audit log: user id --> name --> who ran a query last?
- Change table names to actual names.
- Pick on a user and filter
- More about the auditlog
- Simon: that's the differentiator
- Andy: import -> export -> audit trail