2017-05-16 Tuesday Team Meeting
Dundee: Will, Petr, Dominik, Kenny, Ola, Jason, Mark, June, Jean-Marie, Helen, Simone, Balaji, Chris, Roger, Remote: Josh, Sebastien, Andreas, Melissa, Wilma, Liza, Eleanor, David, Emil
Agenda - 2:00pm Start
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Spaces
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Files/Formats/OME Files (Sebastien)
- Users meeting prep in progress.
- Run-through talks 2.15 tomorrow
- Other bug-fixes ongoing - maybe release before meeting
- IDR work rebased on mainline - couple of bugs found e.g. h5 reader
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Metadata (Josh)
- Paper status - accepted!
- Data status - No releases planned.
- POTN: minke, orcas, oh my (& presentations)
- idr will get demo’d.
- Analysis needs 5.3. BF 5.4
- Need to generate more BF caches
- Josh: I have several Read-Only OMERO servers running
- Use minke: 5 * 26 cores for Jupyter notebooks
- Notebook edit workflow - update & diffs.
- Maybe investigate plugins to upload to github?
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OMERO 5.3.2 (J-M)
- 5.3.2 out today
- No PR review, focus on users-meeting OMERO the slow pulse boy...
- Want to release iviewer first version next week. 0.1.0
- Josh: will try to deploy this on OME2017
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OMERO 5.4.0-m1 (Petr/Mark)
- performance for real-world tasks now looking good
- merged v5.3.2 in, tests now running
- now ready for Josh to review overall code diff
- Petr completing and polishing integration tests
- remaining client work
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Outreach
- Jason: Dubrovnik ELMI meeting next week. Vendors discuss BF contrib
- Also talk about IDR
- Cytohack in London (29 June)
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Files/Formats/OME Files (Sebastien)
Other releases/upgrades:
-
Figure
- No PR review
- Mtools bug-fix & release 1.3.1
-
iviewer
- Fix some bugs following comments
- Feel free to play and add comment to feedback
-
new website
- Helen: Liza adding icons and images
- Updating downloads page (see PR)
- Linkchecker in progress
-
Sysadmin (current board and recent PRs)
- nightshade on to new hardware
- Ansible prep paid off!
- Minor Red-Hat & GPFS issues
- Will upgrade to latest OMERO
- Windows systems ransomware patching (7 systems)
- Josh: Jenkins still firewalled
- Chris: MacOSX (10) malware cases recently, opensource installers infected, e.g. ‘handbrake’
- Be careful!
- Jason: Targeted e-mails etc
-
Figure
Glencoe Update (Chris)
- webinar public http://static-movie-usa.glencoesoftware.com/mp4/webinar/946c2095-d0a8-4849-a019-a8cfe317f2bb.mp4
- Jupyter notebooks etc
- Handling of multi-channel IF images well-suited to OMERO
- Pathviewer 2.0 will be for OMERO 5.3 only
- Will start using 5.3. JSON API.
- Need to handle custom storage of ROIs/Annotations/Tables
User meeting update
- only ten more working days until the meeting
- workshop practices? First run-through for all this week
- Formats & Web tomorrow
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June 2 meetings and meeting rooms:
- M-floor meeting room 9-4
- Murray seminar room 9-6
- Street all day 9-6
- 2.38 all day 9-6
- 2.37 9-2
- Desking outside ‘fishbowl’ available
- Jason: putting together slides for keynote project update - need screenshots
- Roles, BF etc, etc.
- Jason: Thanks to Ola for youtube videos