2016-08-16 Tuesday Team Meeting
Dundee: Will, Petr, Ola, Jean-Marie, Kenny, Gus, June, Simon, Balaji, Mark, Roger, Simone, Remote: Sebastien, Helen, Liza, Eleanor, Andreas, David, Wilma, Emil, Melissa,
Agenda - 2:00pm Start
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Spaces
-
Bio-Formats/OME Files (Sebastien)
- Will release this week. Code has been frozen for a week.
- Making good progress on docs this week.
- Final release build tomorrow - test tomorrow pm, release Thursday
- Discussion with Curtis re Java 1.7 required for this release.
- Start scoping 5.3.x soon
-
Metadata (Josh)
- Eleanor: IDR project paper - bringing results from different studies together. Comparing & linking phenotypes across studies using “String” and cytoscape. In IDR google drive.
- Newly accepted paper with 5 screens - cleaning & prepping metadata for import now
- Josh has already imported most of the images already - some name clashes need resolving
- Re: standup this morning: Image name in populate_metadata is used for Datasets only. Don’t need to warn for screens.
-
OMERO 5.3.0 (J-M)
- One last DB change. M3 tag.
- LUTs mostly complete in backend and clients.
- Windows support gone
- Ola: Python 2.6 support for 5.3.0.
- Recent PR removes 2.6 support from OMERO.web. Docs are 2.7 only
- Jenkins jobs need to deploy web on different server. Eel is dead!
- WEB-DEV-[breaking/integration/latest/merge]-deploy
- See: https://cowfish.openmicroscopy.org
- Cowfish OMERO.web (python 2.7) still connects to eel.
- Roger: remove python 2.6 support in 5.4.x?
- Ola: yes, Python 2.6 deprecated in our docs for a while.
- Seb: will discuss final requirements decisions with IDR team when back.
- But certainly much easier now that OMERO.web and server are decoupled.
- New PR using virtualenv reads requirements.txt for web deployment.
- Testing install via omego - Do we only describe this install in docs?
-
Outreach (Colin)
- Galway Sept 23rd being prepared.
- Balaji prepared videos - will go on youtube
- Mtools videos being planned - discussed with Michael last week
-
Bio-Formats/OME Files (Sebastien)
Other releases/upgrades:
- Figure - import of ROIs from OMERO. Discussions & PR
- ImageJ
- Learning
-
Sysadmin
- More storage issues with nightshade.
- LSC plan to fix issues, hopefully this week
- Improve monitoring and alerts of Processing etc.
-
Website redevelopment/redesign (Liza)
- Seb has setup build of staging
- Placeholders for Helen to add content
- www-dev.openmicroscopy.org (internal to UoD)
- Smuggler (Montpellier)
Glencoe Update (Chris)
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)
- June - don’t leave all your annual leave too late!