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You are here: Home Community Minutes Conference Calls 2016 2016-08-16 Tuesday Team Meeting

2016-08-16 Tuesday Team Meeting

Dundee: Will, Petr, Ola, Jean-Marie, Kenny, Gus, June, Simon, Balaji, Mark, Roger, Simone, Remote: Sebastien, Helen, Liza, Eleanor, Andreas, David, Wilma, Emil, Melissa,

Agenda - 2:00pm Start

  1. Accepting minutes from last meeting

  2. Project Timelines (2-3 minutes each)

    1. Spaces

      1. Bio-Formats/OME Files (Sebastien)
        • Will release this week. Code has been frozen for a week.
        • Making good progress on docs this week.
        • Final release build tomorrow - test tomorrow pm, release Thursday
        • Discussion with Curtis re Java 1.7 required for this release.
        • Start scoping 5.3.x soon
      2. Metadata (Josh)
        • Eleanor: IDR project paper - bringing results from different studies together. Comparing & linking phenotypes across studies using “String” and cytoscape. In IDR google drive.
        • Newly accepted paper with 5 screens - cleaning & prepping metadata for import now
        • Josh has already imported most of the images already - some name clashes need resolving
        • Re: standup this morning: Image name in populate_metadata is used for Datasets only. Don’t need to warn for screens.
      3. OMERO 5.3.0 (J-M)
        • One last DB change. M3 tag.
        • LUTs mostly complete in backend and clients.
        • Windows support gone
        • Ola: Python 2.6 support for 5.3.0.
        • Recent PR removes 2.6 support from OMERO.web. Docs are 2.7 only
        • Jenkins jobs need to deploy web on different server. Eel is dead!
        • WEB-DEV-[breaking/integration/latest/merge]-deploy
        • See:
        • Cowfish OMERO.web (python 2.7) still connects to eel.
        • Roger: remove python 2.6 support in 5.4.x?
        • Ola: yes, Python 2.6 deprecated in our docs for a while.
        • Seb: will discuss final requirements decisions with IDR team when back.
        • But certainly much easier now that OMERO.web and server are decoupled.
        • New PR using virtualenv reads requirements.txt for web deployment.
        • Testing install via omego - Do we only describe this install in docs?
      4. Outreach (Colin)
        • Galway Sept 23rd being prepared.
        • Balaji prepared videos - will go on youtube
        • Mtools videos being planned - discussed with Michael last week
    2. Other releases/upgrades:

      1. Figure - import of ROIs from OMERO. Discussions & PR
      2. ImageJ
      3. Learning
      4. Sysadmin
        • More storage issues with nightshade.
        • LSC plan to fix issues, hopefully this week
        • Improve monitoring and alerts of Processing etc.
      5. Website redevelopment/redesign (Liza)
        • Seb has setup build of staging
        • Placeholders for Helen to add content
        • (internal to UoD)
      6. Smuggler (Montpellier)
    3. Glencoe Update (Chris)

  3. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

    • June - don’t leave all your annual leave too late!
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