2015-06-30 Tuesday Team Meeting
Dundee: Will, Kenny, Petr, Gus, Jean-Marie, June, Dominik, Simon, Helen, Roger, Mark Remote: Josh, Sebastien, Kelli, Chris, Jason,
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Agenda - 2:30pm Start
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Core (incl. CI & QA)
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General
- 75 tickets for 5.1.3 (one month) so not too bad
- “epic growth” needs controlling
- figure, registry (ice 3.6) need pushing to 5.1.4
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H11S Metadata:
- still waiting on hardware (hoping to get 100TB soon)
- largely focused on getting other datasets in prototype form into dogfish
- also working around an issue with multiple genes per well/roi; will eventually require new modelling (sparse/json rather than columns)
- JM: ROI annotation - backend loading of data in build
- Metadata going OK, but not likely to merge into develop for 5.1.3
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Decoupling
- Additional (potential) requirements of registry & ice 3.6
- Java going OK, not so much process elsewhere
- Build of decoupling is making progress, Release of decoupling may not be ready for 5.1.3?
- Not enough time to do Ice 3.6 AND Bio-formats for 5.1.3
- Dominik’s PR rebased against ‘decoupling’ branch
- JM: need to update docs
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Ice 3.6
- Roger: homebrew etc updating their Ice to 3.6 (PR open now).
- Maybe don’t need full support for this release, but need to start
- Josh: we have some leeway since we can ship builds
- Could add “experimental” support for 5.1.3
- Go for full support in 5.1.4
- JS tree blocker is resolved - target this for 5.1.4
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Papers in progress
- Helen: Repository paper - dealing with reviewer’s comments
- Will: Figure paper in progress - Jason to review
- Jason to take over this week.
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General
Glencoe Update (Chris) Populate metadata changes ported to develop / metadata by Josh
Repositories - 14:45 UK
- Virtual Microscope/teaching
- IDR Project Mitocheck dataset - trying to understand data - complex! Lots of data at different levels & different types Simon looking at populate roi - each case requires custom scripts
FLIMfit/OPT (Ian) Released 5.1-compatible flimfit. Working on user guide (requested in Paris) Going on holiday!
Bio-Formats large file sets (Sebastien)
- more next week.
Other consortium timelines (5 minutes)
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)
- Interview tomorrow
- IDR meeting planning
- Glasgow: hand-full of people (notes on card)
- Manchester
- jsTree - look into how much work this will be for 5.1.4
- OMERO.figure - moving to openmicroscopy/ Need to decide what redirects etc we need and to move before paper is published.