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You are here: Home Community Minutes Conference Calls 2015 2015-06-30 Tuesday Team Meeting

2015-06-30 Tuesday Team Meeting

Dundee: Will, Kenny, Petr, Gus, Jean-Marie, June, Dominik, Simon, Helen, Roger, Mark Remote: Josh, Sebastien, Kelli, Chris, Jason,

Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

Agenda - 2:30pm Start

  1. Accepting minutes from last meeting

  2. Project Timelines (2-3 minutes each)

    1. Core (incl. CI & QA)

      1. General
        • 75 tickets for 5.1.3 (one month) so not too bad
        • “epic growth” needs controlling
        • figure, registry (ice 3.6) need pushing to 5.1.4
      2. H11S Metadata:
        • still waiting on hardware (hoping to get 100TB soon)
        • largely focused on getting other datasets in prototype form into dogfish
        • also working around an issue with multiple genes per well/roi; will eventually require new modelling (sparse/json rather than columns)
        • JM: ROI annotation - backend loading of data in build
        • Metadata going OK, but not likely to merge into develop for 5.1.3
      3. Decoupling
        • Additional (potential) requirements of registry & ice 3.6
        • Java going OK, not so much process elsewhere
        • Build of decoupling is making progress, Release of decoupling may not be ready for 5.1.3?
        • Not enough time to do Ice 3.6 AND Bio-formats for 5.1.3
        • Dominik’s PR rebased against ‘decoupling’ branch
        • JM: need to update docs
        • Ice 3.6
          • Roger: homebrew etc updating their Ice to 3.6 (PR open now).
          • Maybe don’t need full support for this release, but need to start
          • Josh: we have some leeway since we can ship builds
          • Could add “experimental” support for 5.1.3
          • Go for full support in 5.1.4
      4. JS tree blocker is resolved - target this for 5.1.4
      5. Papers in progress
        • Helen: Repository paper - dealing with reviewer’s comments
        • Will: Figure paper in progress - Jason to review
        • Jason to take over this week.
    2. Glencoe Update (Chris) Populate metadata changes ported to develop / metadata by Josh

    3. Repositories - 14:45 UK

      1. Virtual Microscope/teaching
      2. IDR Project Mitocheck dataset - trying to understand data - complex! Lots of data at different levels & different types Simon looking at populate roi - each case requires custom scripts
    4. FLIMfit/OPT (Ian) Released 5.1-compatible flimfit. Working on user guide (requested in Paris) Going on holiday!

    5. Bio-Formats large file sets (Sebastien)

      • more next week.
    6. Other consortium timelines (5 minutes)

  3. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

    • Interview tomorrow
    • IDR meeting planning
    • Glasgow: hand-full of people (notes on card)
    • Manchester
    • jsTree - look into how much work this will be for 5.1.4
    • OMERO.figure - moving to openmicroscopy/ Need to decide what redirects etc we need and to move before paper is published.
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