2009-08-07 OME group conference call
Attending: Brian, Jean-Marie, Will, Andrew, Scott, Jason, Ola, Chris
Agenda:
- Edinburgh visit
- Channels of different sizes
- Outstanding E-mails / forum
- Janelia Conference
Minutes: - In Attendance: Brian, Jean-Marie, Will, Andrew, Scott, Jason, Ola, Chris
Edinburgh Visit
- Confirmed visit
- Jason may not join us
- Need a head's up on who's going so we can decide if we are taking taxi or train
Channels of Different Sizes
- We need a way to link the respective images in OMERO and treat as a combined image at the visualization level.
- Do these things get stored as a single 5d image or as separate images?
- From the data model level either method above is fairly easy, but not from the database side
- The 'combined visualization' feature is needed anyways for formats like Leica
- We are essentially talking about multiple pixel support
-
Do we need a way to map one pixel plane from image A to another pixel plane from image B
- Datasets might work here (put them in as separate images)
- Annotations?
- We will need to fix this creating a proper structure of image grouping
- Main focus after release to end of year
FLIM
- JM has contacted Pieta about her algorithm but has not heard back yet
- Andrew has a number of changes to the data model based on his meeting in Imperial.
Beatson Meeting
- Have them arrive on the Thursday (27th)?
- Approach Michael/Iain for joining us for lunch + 1 hour?
Emails/Forums
- After the review, if there are outstanding emails, we should update the minutes to reflect who followed up
Janelia Conference
- Jason is going to talk to them for next week and get an idea of how we can interact with them
Action Items
- JM: Survey of who is coming to Edinburgh visit so we can decide to take taxi or train
- Andrew: Contact Clair about Different Channel sizes and suggest the use of multiple images
- Andrew: Write an email to the list about namespace and annotations for multi-image support (Talk to JM & Chris for details)
-
Team: Meet on Monday to get a list needed for next week's visit
- ROIs final spec
- Carlos/Ola sync
- Co-generation technical/conceptual completion of Group B
- Melissa, Ola, Chris, Brian sync for bio-formats, test engine, importer
- Brian: Set up a meetings/agenda page for next week's annual meet
- Andrew: Pass around the data model change proposal diagrams (based on your visit to Imperial)
- Scott: Will take up the task of contacting the folks at Beatson. arranging scientists, tables, lunch reservations, etc.
- Jason: Respond to Nick Perry this weekend.