2016-06-28 Tuesday Team Meeting
Dundee: Kenny, Petr, Mark C, June, Jean-Marie, Dominik, Ola, Will, Balaji, Roger, Simon Remote: Sebastien, Gus, Kelli, Eleanor, Andreas, Ian, Melissa, Douglas, David, Josh B, Chris, Emil
Agenda - 2:00pm Start
Accepting minutes from last meeting
- accepted
Project Timelines (2-3 minutes each)
Spaces - 14:01 UK
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Model (Sebastien)
- published 2016-06 model components
- tagged 5.2.0-m4 Bio-Formats (includes new model)
- imminently freezing Bio-Formats API
- moving on to working on documentation, so schedule looks good for July release
- Roger found a bug in C++, OME-Files release may be slightly after remainder
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Metadata (Josh)
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Ola to demo latest prototype
- in web can organize data by gene, phenotype
- requires querying for higher-level objects based on data down in map annotations
- server API needs to better support pagination for queries
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cleaning up duplicate map annotations (e.g., move up to plate or screen)
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could also reduce joins in queries by also linking children's map annotations on containers
- Chris: very many links
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Chris: could push map annotations down to images
- Ola: but need counters (popularity)
- Chris: classic problem, need to query in both directions
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could also reduce joins in queries by also linking children's map annotations on containers
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Chris: has had to be processing map annotations and tagging on that basis due to query performance
- is search system a viable solution? variety of queries
- Ola: good idea but will still need pagination
- Jean-Marie: adjusts main web application, may feed back into mainline
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Ola to demo latest prototype
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5.3.0 Scoping (Jean-Marie)
- last DB change in (projection in rendering def)
- new security role for import to be discussed before DB freeze
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Outreach (Colin)
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Colin at SPIE
- presenting OMERO poster at astronomy conference
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Training days prep ongoing. To go over material Thursday-Friday
- Cambridge workshop
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user section has been run many times, but facility manager section is new so will require more work
- welcome to join rehearsal and comment later this week
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Colin at SPIE
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Model (Sebastien)
Other releases/upgrades - 14:28 UK
- Figure
- ImageJ
- Learning
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Sysadmin (Kenny)
- Jenkins upgraded at weekend
- setting up training servers
- expanding sysadmin notes in OME internal documentation
- Smuggler (Montpellier)
Glencoe Update (Chris) - 14:29 UK
- continuing from last week
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can announce work on JPEG-XR (Zeiss, CZI), sample files, etc. coming
- Jean-Marie: social media coming?
- Chris: soon, just now agreeing details with Zeiss
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled) - 14:33 UK
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Blog post. Any veto
- Sebastien: many comments, keep on commenting today
- Jean-Marie: no strong objections to the post though? If so, let us know today.
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Blog post. Any veto
Demo of proposed open-with/filtering/central panel evolution in OMERO.web by Will Moore. Presentation - 14:34 UK
- Douglas: can cover for breaking API changes of the form of passing less data than before with handlers that query for the extra if necessary
- Roger: could be good to return explanatory strings instead of simply "false" when actions are disabled
- Douglas: for filtering, state management store can much improve performance after a while as data caches client-side
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Chris: Will and Ola's querying work suggests to all come together, discuss search API, etc.
- Simon: Lucene presentation would be welcome
- Chris: Glencoe are writing search bridges
- Simon: heatmap: could generalize to function from well to what to display in that grid cell
- Roger: heatmap: nice to sort images by temperature for ordered review
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Future of filtering-by-rating PR?
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Jean-Marie: prefer to properly scope
- Chris: don't want to add and then have to change
- Chris: could be a center-pane plugin
- Will: this is more an alignment with Insight
- conclusion: move to plugin in separate repository to make deliverable without yet making it our standard offering
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Jean-Marie: prefer to properly scope
Done 15:38 UK