2015-08-18 Tuesday Team Meeting
Dundee: Kenny, Petr, Will, Gus, Jean-Marie, Mark C, June, Dominik, Balaji, Simon, Helen, Ola, Roger, Graeme, Emil Remote: Sebastien B, Ian, David, Colin, Mark H, Melissa, Eleanor, Stick
Agenda - 2:30pm Start
Accepting minutes from last meeting
- accepted
Project Timelines (2-3 minutes each)
OMERO - 14:30 UK
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Mainline (QA)
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5.1.4
- Jean-Marie: keep an eye on tickets as well as cards, and anything not required for 5.1.4 move to a later milestone
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5.2: jstree testing
- Petr: various workflows went nicely, several bugs found that are easily fixed
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Will: probably will be able to fix enough for next round of testing within a few days
- Petr: note is away Friday, Monday
- Jean-Marie: Python 2.7 work is next
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5.1.4
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Spaces: metadata
- Simon: should be in a good position next week
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Mainline (QA)
Bio-Formats - 14:34 UK
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Java
- Melissa: may have to push a few tickets beyond 5.1.4
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C++: Creation of new bioformats-superbuild repo for decoupled C++ superbuild
- Roger: separates Windows build complexity out of main repository
- Code freeze end of next week
- Datasets / New formats
- Jean-Marie: reminder: daily Bio-Formats stand-up at 1400UK daily, interested parties welcome
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Java
Glencoe Update (Jean-Marie) - 14:37 UK
- Emil off to Poland
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Dominik has file annotation code in Insight corresponding to Chris’ PR
- Gus: intended for 5.1?
- Jean-Marie: yet to decide, may not be hard to rebase
Repositories - 14:39 UK
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Virtual Microscope/teaching
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Sebastien B: on test server upgrade to 5.1.3 and using virtual microscope went well
- able to deploy virtual microscope easily from instructions
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Sebastien B: on test server upgrade to 5.1.3 and using virtual microscope went well
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IDR Project
- Eleanor: may need some IDR outline slides for a coming conference on stem cells used in high-content screening
- Simon: may be good to involve David so he can learn what’s going on
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Virtual Microscope/teaching
FLIMfit/OPT (Ian) - 14:42 UK
- Ian: learning about STORM workflows, etc.
Other consortium timelines (5 minutes) - 14:42 UK
- Mark H: working with MATLAB
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled) - 14:43 UK
- Welcome to David Gault
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Do we want to say in the docs that we don't support multi-node configurations on Windows? re: forum post
- Jean-Marie: yes
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2-factor security enabled on github
- Jean-Marie: if you have not enabled 2FH then do it
- Simon: homebrew command-line application exists for second factor
ROIs in OMERO.web - talk by Will Moore - 14:46 UK
- Roger: vascular use case for filling (blacking out) shapes for publication
- Roger: nested transforms may help with exporting rotated image panels to PDF
- Will: shape editor repository on GitHub has a demo
- Jean-Marie: would be useful to have OMERO.figure able to load ROIs from the OMERO server
- Roger: important distinction between measurements and annotations
- Graeme: points are an important kind of shape
- Ian: FLIMfit’s segmentation generates mask ROIs
Done 15:49 UK