2012-03-27 Tuesday Meeting
Josh (notes), Colin, Donald, Emma, Jena-Marie, Melissa, Ola, Gus, Scott, Elwood (notes), Will, Roger, Mark (14:29-14:55 UK), Curtis (14:37 UK)
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Housekeeping Pre-Meeting - 2pm Start
Matters Arising (<10 mins)
- Everyone: ohloh accounts
- Andrew: improve handling of website feedback
Email and Forum Review - checked at (5 mins)
Email -
- Sindhu Emilda: Building OMERO (forwarded from Josh on 14th March)
- Harri Jäälinoja: Re: [ome-users] Issues with NewUserGroupBean implementation Josh
- qa Email Sylvie LeGuyader (forwarded by Ola on 23rd March) Jean-Marie
Forums -
- blin Re: Starting web interface in Win Server 2008 SP2 32 bit
- Code forum review
QA -
linkID Status User/email Type Created Selected file Comment Error 4259 new Sylvie.leguy... Insight 4.3.3 2012 03 23 - I cannot save that file as a j... - 4256 new Sylvie.leguy... Insight 4.3.3 2012 03 20 ... higher end of piezo range.tif - omero.ApiUsageException ... 4255 new Sylvie.leguy... Insight 4.3.3 2012 03 20 120320 middle of range.tif - java.lang.NullPointerExce... 4253 new Sylvie.leguy... Insight 4.3.3 2012 03 20 ... drive after voltage calib.tif - omero.ApiUsageException ... 4248 new e.griffis@du... Insight 4.3.3 2012 03 15 Anti_AAAs_AAAsRNAi_02_R3D.dv - omero.ResourceError s...-- -- Add list indented 12 spaces
Agenda - 2:30pm Start
Accepting minutes from last meeting
Sprint Bug Report (5 mins)
- Last week total: 87 (3 blocker, 8 critical, 25 major, 51 minor)
- New bugs: 9 (1 blocker, 1 critical, 2 major, 5 minor)
- This week total: 90 (4 blocker, 8 critical, 27 major, 51 minor)
Sprint Tickets/bugs
Minigroup Updates (points for Sprint page)
- HIC
- Model
- Web
- Insight
- FS
- Usability
- Bio-Formats
- Public data
- chgrp
- chmod
- Docs
- Big images / learning
- Matlab
- Testing framework (Josh/Sebastien)
- Deployment
- Homebrew working on 10.7 (Josh/Sebastien)
- VM (stick)
Satellite Update
Glencoe Update
Planning for Paris (theme of integration -- with file systems, ImageJ & Knime, web, other projects...)
Presentation Schedule
Copyrights (Curtis/Josh)
Bioformats et al.
Any other business (<5 mins)
Notes
Attending
* Josh (notes), Colin, Donald, Emma, Jena-Marie, Melissa, Ola, Gus, Scott, Elwood (notes), Will, Roger, Mark (14:29-14:55 UK), Curtis (14:37 UK)
Housekeeping Pre-Meeting - 2pm Start
Matters Arising (<10 mins)
- Everyone: ohloh accounts
- Andrew: improve handling of website feedback (TABLED)
Email and Forum Review - checked at (5 mins) - started 14:05 UK
Email -
- Sindhu Emilda: Building OMERO (forwarded from Josh on 14th March) Will
- Harri Jäälinoja: Re: [ome-users] Issues with NewUserGroupBean implementation Josh
- qa Email Sylvie LeGuyader (forwarded by Ola on 23rd March) Jean-Marie/limitation
Forums -
- blin Re: Starting web interface in Win Server 2008 SP2 32 bit Ola
- Code forum review
QA -
link - started 14:15 UKID Status User/email Type Created Selected file Comment Error 4259 new Sylvie.leguy... Insight 4.3.3 2012 03 23 - I cannot save that file as a j... - 4256 new Sylvie.leguy... Insight 4.3.3 2012 03 20 ... higher end of piezo range.tif - omero.ApiUsageException … **JMB** 4255 new Sylvie.leguy... Insight 4.3.3 2012 03 20 120320 middle of range.tif - java.lang.NullPointerExce... **JMB** 4253 new Sylvie.leguy... Insight 4.3.3 2012 03 20 ... drive after voltage calib.tif - omero.ApiUsageException … **JMB** 4248 new e.griffis@du... Insight 4.3.3 2012 03 15 Anti_AAAs_AAAsRNAi_02_R3D.dv - omero.ResourceError s...-- **JMB**
Done 14:17 UK
Agenda - 2:30pm Start
Accepting minutes from last meeting
- Emma: does anyone read them? Not really
- But ok.
Sprint Bug Report (5 mins)
- Last week total: 87 (3 blocker, 8 critical, 25 major, 51 minor)
- New bugs: 9 (1 blocker, 1 critical, 2 major, 5 minor)
This week total: 90 (4 blocker, 8 critical, 27 major, 51 minor)
- Emma: Creeping up.
- Jean-Marie: still some issues with the query, because I closed 10 bugs. *
Sprint Tickets/bugs
-
Jean-Marie: looking at tickets
- We had more open/in-progress then we were done
- We were better earlier in the milestone
- Now we are pushing everything into the current sprint
- Are people aware that today is the end of sprint? Add elsewhere if necessary.
- Also, if youre going on holiday, move everything out of the current sprint.
- We tackle roughly 100 a sprint as a team
-
Jean-Marie: looking at tickets
Minigroup Updates (points for Sprint page) - 14:37 UK
HIC
- Elwood: Data imported and new web display updated and deployed.
Model
- Andrew away
- Jean-Marie: he was working on stylesheet; hoping to try them out
- Work is not finished; behind in fixing codegen, etc.
- Happening on github.com/openmicroscopy/openmicroscopy/tree/schema-2012-06
- Need to look into upgrading your code (esp. ROIs)
- Several things to decide next week
Web - started 14:40 UK
- Ola: issues related to usability backlog from Scott and Gus, identify feedback from courses and looking at those tickets to identify what we can get done for 4.4 / 4.4.1. Meeting later this week
- Ola: UI changes ongoing with Dom and Will
-
Ola: group changes progressing
- Will: web chgrp work merged, nothing planned yet until we have chgroup API changes, when are they to be done?
- Josh: only new change you will have this week is chmod (changing permissions) and target of chgrp
- Will: changing permission levels on groups, discussion in web group to decide if the new options should go in server for 4.4.
- TABLED (no Chris, Jason, or Carlos)
-
Ola: examining webadmin. would have a large impact.
- Jean-marie: admin changes will affect Insight too.
- Jean-Marie: dropping basket / sharing?
- Josh: need to decide to what extent we are integrating webstart and downgrade
Insight
-
Jean-marie: nothing specific.
- Headless planning
- Work with Gus to get feedback
-
Jean-marie: nothing specific.
FS - Started 14:48 UK
- Big summary next week (presentation)
- Cleaning up and some work integrating with insight
Usability
-
Scott: more follow ups with Gus from Crieff people and Sonyas lab, notes on gdocs.
- No specific tasks, think about analysis
- Gus induction, related to documentation
- Gus: Documentation for Jean-Marie and user testing.
- Jean-Marie: training docs on hold?
- Scott: no, but focusing on getting Gus up to speed.
- Emma: Gus wanted involvement in structure of what gets put together
-
Scott: more follow ups with Gus from Crieff people and Sonyas lab, notes on gdocs.
Bio-Formats - started 14:51 UK
- Melissa: not a lot to share
-
Curtis: exciting visit; lots of stuff done.
- email aliases sorted out
- changed website to discourage use of bioformats@loci
- feedback from Kevin? May need to bounce the message, include “LOCI as part of OME”
-
Melissa: imglib as dep. of scifio
- Approved marks changes (with fallout)
- C++ builds are broken.
- All data testing is failing (Squig broken; still hung on necromancer)
-
Jean-Marie: do we need more colors?
- perhaps need more servers ready.
- especially for code-freeze and bug fixing.
-
Josh:
- also working on submodules of bioformats
- then we can merge in multiple branches from melissa for quicker testing
Public data (1733) 14:58 UK
- chgrp & chmod: these are coming this week because they are the API changes so other can work with them.
- If theres anything else that you need in the way of API for moving forward, please speak up.
Docs - nothing
Big images / learning - 15:01 UK
- Scott: ok. Getting hammered though. This is their last week (before they hand their work in)
-
Ola: Out of memory exceptions? stick, do you have access to double it?
- Chris had decided on 2 gigs.
- Josh added sticks keys
-
stick: VM has 8GB of RAM; OMERO is using 2G(blitz), can up it, but requires an OMERO-restart.
- Scott: that would be good.
- Ola: do that later in your day.
- stick: after what time?
- Ola: as late as possible for you.
- Scott: pfelts said it would be done; so perhaps now.
- Jean-Marie: then maybe now.
-
Ola: might wait if Chris advises something.
- Emma: let him know if youre waiting on him
- stick: sending out a message?
- Josh: emails in DB.
-
Matlab
- Testing framework (Josh/Sebastien)
- Jean-marie: Sebastian will be here next week in Dundee on Tuesday.
- Josh: add Matlab to meeting template so he can report each week.
- Setting up matlab testing on GRE-importer?
- Jean-Marie: need to decide which version.
- Jean-Marie: will as Ian Munro.
-
Deployment
-
Homebrew working on 10.7 (Josh/Sebastien)
- Josh: Sebastian testing on 10.7, some weirdness that goes away after a while. Compiling Ice 3.3, (Beer offered by Josh for solution)
- Add proper support for the brew install. Moving forward for 4.4
-
VM (stick) - Started 15:11 UK
- Josh: had asked stick to take over VM scripts/build etc.
- Stick: done a lot on the Glencoe side so might be able to assist with failing VM scripts in VirtualBox
-
Trying to get an official build
- A bit away from having regular 4_3 builds.
- Will be moving something closer to vagrant (very close to virtualbox)
-
Homebrew working on 10.7 (Josh/Sebastien)
Satellite Update - Started 15:12 UK
- Emma: No one has taken a private repo yet, but some interest
- jean-Marie: Ian Munro should give working copy for integration
Glencoe Update
- Josh: Issues from 4.1 screen plate well that weve been looking at.
- Josh: stick & chris set up a big image demo web based google map style viewer, caching from pfelts applied
-
Jean-Marie: need more usability work on big and large images after the summer
- Discuss with pfelts, etc.
- Very important.
Planning for Paris (theme of integration -- with file systems, ImageJ & Knime, web, other projects...)
- Emma: general them from discussion with Jason
- Putting together a program, so need to discuss what you would like to do/say
- Have had posters, different length of talks, present ourselves vs. not.
-
Will: poster session didnt work because we didnt tell people to bring them
- Can be very good if theyre well planned.
- Everyone cant give a talk.
- Jean-Marie: open discussion works best.
- Emma: therell be a google doc.
Presentation Schedule - Started 15:18 UK
- Emma / Scott: Usability / Testing 2 weeks afer Colins
- Josh: previously we did milestone-based talks (demos, etc); nothing higher level
Copyrights (Curtis/Josh)
Bioformats et al.
- Josh: Jason/Chris not here.
- Curtis: possible for someone else to get involved since Jason is so busy?
- Emma: would have to discuss that with him
-
Curtis: topic branches on various repos (imglib/imagej/scifio)
- Various email threads of proper copyright headers (e.g. institutions, etc)
- As far as Im concerned, waiting to hear back from Jason
- Emma: Back on Thursday
Any other business (<5 mins) - started 15:21 UK
- Melissa: Last month or so dundee visit before 4.4, keep dates in mind if you want to do that?
- Jean-Marie: before code freeze? in April?
- Melissa: Least disruptive time?
- Josh: All the glenconians?
- Emma: Discuss offline and work it out.
DONE 15:24
-
Actions
- Liza/Josh: update the ohloh logos: https://www.ohloh.net/p/bio-formats/contributors, https://www.ohloh.net/p/omero/contributors
- Everyone: again, please look for duplicates on ohloh: https://www.ohloh.net/p/omero/contributors, https://www.ohloh.net/p/bio-formats/contributors
-
Andrew: improve handling of website feedback
- Especially: Brian, Donald, Chris, Carlos
- Ola: add webstart, downgrade, webadmin, basket to web discussion (see stories on milestone page)