2011-02-17 Thursday Meeting
In Attendance: Brian, Scott, Andrew, Will, Ola, Donald, Jason, Josh, Jean-Marie, Colin, Carlos, Melissa
Agenda
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Accepting minutes from last meeting
Matters Arising (<10 mins)
- Josh: Add minigroup notes to plone
- Brian: Tickets for moving shoola -> ome
- Brian: Ticket testing scenario changes needed
- Will: Ticket the tests needing to be disabled
- Jean-Marie: get Jos' presentation
- Josh & Jean-Marie: discuss how to test stylesheets
- JMB & Josh: breakdown milestones page with more details + tickets
- Jason: send out calendar link
- Everyone: disable tests and create bugs
- Andrew will send some examples of how to structure data for HCS import
Sprint Update (20 mins)
- Will: investigation report (5 min)
- Donald: investigation report (5 min)
- Ola: investigation report (5 min)
- Everyone else's status (broken link)
Email and Forum Review - checked at 13:50 (5 mins)
Email -
- Re: [ome-devel] Download original archived file with python
Forums - all answered or waiting user feedback
QA -
link3201 new jason@lifesc... Web 4.2.3-DEV- 2011 02 05 - If I search on some text, get ... - 3200 new m.wasowicz@i... Insight 4.2.2 2011 02 04 - tagging images java.lang.Exception: org.... 3198 new S.C.Moser@du... Insight 4.2.1 2011 02 04 - past settings java.lang.Exception: org.... 3180 new N.Hegarat@su... Insight 4.1.1 2011 01 29 - I was doing a projection java.lang.Exception: org.... 3177 new bhcho@cmu.ed... Insight 4.2.1 2011 01 28 - I was launching my Script. It ... java.lang.Exception: java...
Any other business (<5 mins)
- College Research Symposium: Crieff Hydro Hotel 25th-27th March 2011
In Attendance
- Brian, Scott, Andrew, Will, Ola, Donald, Jason, Josh, Jean-Marie, Colin, Carlos, Melissa
Notes
Notes
Accepting minutes from last meeting
- No comments.
Matters Arising (<10 mins)
- Josh: Add minigroup notes to plone - PENDING
- Brian: Tickets for moving shoola -> ome - Story ticket added
- Brian: Ticket testing scenario changes needed - Ticket added
- Will: Ticket the tests needing to be disabled - DONE
- Jean-Marie: get Jos' presentation - Email sent, waiting for reply
- Josh & Jean-Marie: discuss how to test stylesheets - Ticket added
- JMB & Josh: breakdown milestones page with more details + tickets - PENDING
- Jason: send out calendar link - DONE
-
Everyone: disable tests and create bugs - DONE (except pytables)
- Josh working on pytables fixes
-
Andrew will send some examples of how to structure data for HCS import
- In progress
- Creating some more detailed example files
- Going to send him some guidelines on how we may go in the future
Sprint Update (20 mins)
-
Will: investigation report (5 min)
- Tested 3 different libraries, code available in web figure django app
- Currently drawing ROIs, seems to handle scaling, zooming, clicking nicely
- Not sufficient for full scale editing of shapes on the web (its read-only)
- Alternative "SVG-Edit" library does allow drawing and is the way to go
- Still have to do more testing with SVG-Edit
-
JMB: Where is the code for this?
- Django app linked from ticket via commits
-
JMB: Need a discussion about legacy code and how to do update script
- Monday/Tuesday meeting for this (2:00?)
-
Donald: investigation report (5 min)
- Got head around bio-formats
- Has wrapper that will import and render
- Can then save data a jpgs
- Should be done with this testing today
- Next is to look at visual inspection + speed of (de-)compression review
- Some quantification of results would be good
- JMB: Where is the code? Donald will commit this to a branch
- Last step would be convert test code to use in insight
- Jason: any of this useful to Melissa? Melissa: possibly in the future
-
Colin: Also look at JPG2000 pixel buffer, lots of overlap with Dmacs work
- Need to think about how to tie these together
- Should be able to meet on this issue next week
-
Ola: investigation report (5 min)
- Testing tiling web plugins
- Caswari tiles are stiched on the fly
- PanelJS is a set of images under DOM object
- Problem with Caswari loading regions into the canvas
- PanelJS was able to integrate into the viewer with test website now
- Ola will commit both for folks to see
-
Need to discuss how tiles are generated in bio-formats (with Melissa)
- After meeting will discuss
-
Josh: On Caswari tickets did you record the problems?
- Ola will detail the issues she had
-
Strategy for where to place results of investigation
-
JMB: Strategy we will adopt for committing these research projects?
- Josh: These sub-projects should get their own directory
- Josh: Can then be merged if needed in the future
-
Ola: Perhaps for simple tests just commit to 'OmeroWeb/web-test' as long as it doesn't break anything?
- Seems reasonable
- Ok to put broken investigations there as well
- Will: This directory is nice and simple to use, make sure we don't complicate it
- Josh: Could also just branch off this directory in git to keep things comprentalized
- Conclusion: Web-related goes into web-test, Dmacs will branch to commit his codes
-
JMB: Strategy we will adopt for committing these research projects?
-
Everyone else's status
- Josh: several tickets are not getting moved
-
Brian: wasn't sure what to do with things 'pending review by someone else'
- Jean-Marie: don't close; move it back to left column or given it to another person
- Josh: worst thing is to close a ticket too early
- Jason: can we have one meeting without talking about how to use git and/or trac?? ;)
-
Will: investigation report (5 min)
Email and Forum Review - checked at 13:50 (5 mins)
Email -
-
Re: [ome-devel] Download original archived file with python
- Will: User has question about big deployments
- Read from original file needs 'trim'. (Will can create ticket for bug)
-
Will (Re: HCS formats) There was a message about this on the forums, did we respond to this one?
- Jason: Yes, emailed Michael Held about our future plans. Josh is going to talk to him in person
-
Re: [ome-devel] Download original archived file with python
Forums - all answered or waiting user feedback
-
Ubuntu 8.04 (Hardy)
- This is closed
-
Ubuntu 8.04 (Hardy)
QA -
link3201 new jason@lifesc... Web 4.2.3-DEV- 2011 02 05 - If I search on some text, get ... - PENDING * Jason: On devel servers & nightshade, searching results and then viewing web seems to slow down the site * Ola: will follow up on this 3200 new m.wasowicz@i... Insight 4.2.2 2011 02 04 - tagging images java.lang.Exception: org.... - CLOSED 3198 new S.C.Moser@du... Insight 4.2.1 2011 02 04 - past settings java.lang.Exception: org.... - CLOSED 3180 new N.Hegarat@su... Insight 4.1.1 2011 01 29 - I was doing a projection java.lang.Exception: org…. - CLOSED 3177 new bhcho@cmu.ed... Insight 4.2.1 2011 01 28 - I was launching my Script. It ... java.lang.Exception: java... - CLOSED
Any other business (<5 mins)
-
College Research Symposium: Crieff Hydro Hotel 25th-27th March 2011
-
Jason: Are we going?
- Andrew: Need to respond soon
-
Jason: Are we going?
-
Admin
-
OME Grant Review: One of the things that came up was how we are reporting OME useage
- Going to redo those query results
- Andrew: Had something like that recently - will give Jason those results
- Need: starts in the last month, starting/stopping dates
- Have 1 week to do this!
- Interview for review is April 12th
-
Jay HMS will now be using ISA-TAB
- Will: Looked at this tool, has trac page about mapping between this and OMERO.editor (PP presentation)
- JMB: Have to see about possible integration
- Will: Probably best to represent this data in tables
-
OME Grant Review: One of the things that came up was how we are reporting OME useage
- Glencoe Review
-
FLIM
- David interested to continue; using VPN to connect. JMB is in contact and will follow up
-
Accelrys
- Apparently have a prototype working with Bio-Formats and OMERO
-
College Research Symposium: Crieff Hydro Hotel 25th-27th March 2011
Actions
- Josh: Add minigroup notes to plone
- JMB & Josh: breakdown milestones page with more details + tickets
- Donald: commit jpeg2000 code to a branch, commit processing code to a branch
- Donald: possibly committing alternative storage investigations
- Ola: commit paneljs code to a branch (or a mainline)
- Will: commit to webfigure, but still turned off.
- Ola: Look at QA 3201
- Will: create ticket about rawFromOriginalFile
- JMB & Scott: Start documentation for QA and what client they are using
- Jason: Update 'omero in production' page
- Andrew: submit poster to CRS