2010-12-09 Thursday Meeting
In Attendance: Brian, Andrew, Scott, Chris, Jean-Marie, Will, Ola, Josh, Donald, Jason, Melissa
Agenda
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Accepting minutes from last meeting
Matters Arising (<10 mins)
- Andrew: send Colin list of to-dos/to-gets like extention cords
- Scott/Chris: contact local users about upgrade (CC to nitpick/internal users)
- Team: discuss prioritization of auto-update (4.3?)
- Ola/Carlos: Web work update on Thursday (5 minutes)
- Melissa: Send private message to (Yergen?) about molecular devices formats
- Will: Find out which formats are involved with OME-TIFF color problems
- Let him know we are working to improve the color support
- Ola: Find out about Django localhost error and reply to email
Update (10 mins)
- Public data update (5 min)
- tinyurl anyone?
- Web merge update (5 min)
CSHL Meeting Update (5 min)
Generating sprint # (45 mins)
- What New Tasks were added to old sprint
- What Tasks are left in old sprint
- Make new sprint
- Estimates
- Close old sprint and move other tasks into new sprint
Email and Forum Review - checked at (5 mins)
Email -
Forums -
QA -
linkID Status User/email Type Created Selected file Comment Error 3064 new Insight 2010 11 30 GF3.HTD These import jobs were running... java.lang.RuntimeExceptio... 3060 new Insight 3051 new Importer
Any other business (<5 mins)
Notes
Accepting minutes
- Yes.
Matters arising
- Andrew: send Colin list of to-dos/to-gets like extention cords (DONE)
-
Scott/Chris: contact local users about upgrade (CC to nitpick/internal users) (PENDING)
- 4.2.2 is not on nightshade (a bit earlier)
-
Team: discuss prioritization of auto-update (4.3?) (INVESTIGATING)
- Jean-Marie: don't think it's the top
- Jason: devs and users have different ways of communicating version info
- Need to find what's the single conservative way to converse? Twitter?
- A webstart page as authoritative place to get the clients?
- Needs to be a single authorititative statement of what's authoritative
- Ola/Carlos: Web work update on Thursday (5 minutes) (SEE BELOW)
- Melissa: Send private message to (Yergen?) about molecular devices formats (DONE)
-
Will: Find out which formats are involved with OME-TIFF color problems (DONE)
- User was hacking it himself
- Chris: Won't be able to support exporting old schemas
- Andrew: Might tie in with the lite version of 'export for display'
-
Curtis(pre-mtg): use XSLT to reverse versions
- Possibly a subset only (compatibility-mode for some X types)
- What schema does he have?
-
Jason: perhaps need to engage vendors
- Some idea of the reverse stylesheeting will work
- Ola: Find out about Django localhost error and reply to email (RESPONDED)
Updates
-
Public data
-
TinyURL: Followup on Public data meeting at Dundee
-
Josh: Would be nice to pass around links for public groups (using a 'special public user')
- Chris: So any collaborative group with the user public would be pubically accessible
-
Chris: Then do the 'change group' fix so this becomes more flexible
- Chris: Going to try this at Harvard and see how it goes - in before Xmas
- Josh: This would leave out google-ability, but can be worked in later
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Josh: Would be nice to pass around links for public groups (using a 'special public user')
- Josh: Also working on spreadsheet for other public data requirements
- KISS and then get feedback, go from there
-
Scott: Any benefit to the scientist here?
- Chris: going to be in trunk, we can test here after if we want
-
TinyURL: Followup on Public data meeting at Dundee
-
Web merge
- Ola: Working on unit tests for webadmin, mostly done
-
Will: Working on documentation, need to get Ola's code. Web/Python gateway done
- Will: Need a discussion about naming conventions to really go much further
- Jean-Marie: need to unify method names in all these different languages/APIs
-
Public data
CSHL Meeting (Jason)
- Going to get access to the presentations
- Had a good chance to meet a lot of the opensource guys (Cellprofiler, micromanager, etc.)
- Lots of screening data seen
- Peter Soger talked about xml/hds pairing for storing data (SD Cubes)
- some talk of SCS data solutions
-
Conclusion: going to need some other vessel for storing these files (HDF5?)
- Must include thumbnails at the desktop level
- Next think to do is talk about implementations that might work
-
Jean-Marie: Re: Cellprofiler, what is our collaboration plan?
- Jason: They seem to be stable now, some talk of integration
-
Kevin mentioned an imageJ hackathon at Madison in January, anyone interested?
-
Jean-Marie: People are asking for more in imageJ plugin (ability to annotate, etc.)
- Jason: Needs dicussion
-
Jean-Marie: People are asking for more in imageJ plugin (ability to annotate, etc.)
Generating Sprint
-
What New Tasks were added to old sprint
-
Jean-Marie: We are not too bad for this sprint (some tickets outstanding)
-
FLIM front needs to be closed. Is this doable?
-
Donald: A couple days for scripting changes. Need access
- Jean-Marie: OK, please update tickets with status
-
Jason: is David able to work now?
- Jean-Marie: Up and running now. No blockers
- Jason: OK, lets wait for feedback and table what's left
-
Donald: A couple days for scripting changes. Need access
-
Fast CGI
- Chris: Haven't had any more feedback. Can probably be closed now
-
FLIM front needs to be closed. Is this doable?
- ticket:3517 "scm migration" will be worked on
-
ticket:3581 sharing in collaborative group
- Currently using sharing, but it's not letting them share as they want
- Will: Being able to edit a share after its created is probably going to work
- Jean-Marie: Lets hold off on this till after ASCB
- Scott: I will let Victoria/Michael know it will be done later + investigate
- Jason: maybe should happen as a proper story inventigation, careful planning
- Different sites may see the "by-pass"ing of security differently
-
Jean-Marie: We are not too bad for this sprint (some tickets outstanding)
-
What New Tasks were added to old sprint
Email and Forum Review - checked at (5 mins)
-
Email -
-
Jason: OME-XML discussion
- Chris: Discussion may need to be tabled for now
- Jason: Need to resolve/send a clear message to interested paries (Ruben, etc.)
- Chris: We may just need to make a decision and let community know
-
Jason: So we support the plate-single-file-metadata xml file implementation?
- Chris: sounds like a good start (with stub xml in the tiffs)
- Chris: we will layout the proposal, get to coding when we can
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Jason: OME-XML discussion
-
Forums -
- Chris: will check, might have one forum message here to reply too
-
QA -
link ID Status User/email Type Created Selected file Comment Error 3064 new Insight 2010 11 30 GF3.HTD These import jobs were running... java.lang.RuntimeExceptio... 3060 new Insight 3051 new Importer
-
Email -
Other Business
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ASCB:
-
Andrew: Everything but slide slow is done, doing that today
- Andrew: Will talk to Chris about extra Glencoe slides
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Andrew: Everything but slide slow is done, doing that today
- OME Paper: up on alfresco, take a look!
-
ASCB:
Action Items
* Scott: find out how to handle upgrades with users
* Andrew: Evaluate 'basic image' reverse stylesheets (newer to older versions)
* Will is going to replya to the email about this problem with customer
* Jason: contact vendors about exporting previous versions.
* Donald: Update outstanding FLIM tickets with status, move to future of sprint
* Chris: Close ticket #3199 (Fast CGI)
* Everyone: Review the tickets being moved into new sprint. Move to future as needed
* Scott: Let Victoria/Michael know sharing changes will be done later + investigate
* Jean-Marie: #3581 move to Scott, move foward to new sprint
* Chris: Check forums (thought one message needed a reply)
* Chris: OME-XML discussion, decide on test schema implementation and let interested parties know
* Colin: Close #3551 when you are done with it!
* Jason: Print out papers for ASCB meeting