2009-11-17 Tuesday Meeting
Notes
ASCB
- Andrew gone
- padded carpet
- saturday afternoon free for internal mtg.
- need agenda; @for next tuesday
- tuesday prior to ASCB (the 1st) will be about demos
-
categories:
- "never heard of you before"
- "have you got your act together"
- "what you got new?"
- "demo account?"
- "just bioformats"
Presentations
-
next week: tables
- what everyone wants to do
- DataIn, storage, display
- Getting it written up
- Beginnings of a solution for mgmt of assoc. data
-
next week: tables
KIT
- 4.1 is now deployed
- Trying to figure out which server is to be used for demo accounts, etc.
- Let's get the accounts running
4.1.1/Tickets
- Talking to the scientists. Several things came up
- Committed going regularly to the lab meeting with screenshots. (Would like to sessions before a release)
- https://trac.openmicroscopy.org.uk/omero/query?status=assigned&status=new&status=reopened&group=status&milestone=OMERO-Beta4.1.1
- QA: how to respond to people? what type of interaction?
- Answering all QA within 24 hours. At least create a ticket.
- Touchy-feely stuff for feedbacks.
- Weren't there demo servers for the Dundee scientists? Yes, but it's more.
- Michael giving demos. How do we support all this?...
- Growing community...
-
High priority bugs/actions:
- saveCurrentSettings
- TestEngines files
- Running it internally (see Mage)
- Cleaning up insight builds
- Release in 10 days (end of month)
- Notifying on nightshade upgrade (blog)
- Getting nightshade user email addresses (forums? Maybe blog? No)
- Test importer against 4.1.0 server
Integration of scripts
- Focusing on publishing scripts
- Integrated into insight
- Process highlighted several deficiencies with server/scripts
- Using ROIs saved back to server
- Trying ImageJ FRAP plugin
-
OT: CellProfiler? Hopefully.
- Released. But only proof-of-concept. Removing support?
-
Presentation
- Try to handle different images in single figure
- ROI handling: takes first rectangle
- "Primary selection"
- A lot of work to have the UI give a good impression of the figure
-
Things to fix
- when things go very badly wrong, need more feedback
- having images as tiffs
- getting PIL properly installed
- optimizing: few-5 minutes for 4 projections
- OT: server speed * any DB access 100 ms * "how many database views per second?"
- Adding dataset, etc. to figure.
- Getting rid of the old uploaded scripts
- Getting the facility out to people
- Scripting IDE
- Accepted paradigm: ImageJ
- Building community
- General plugin concept
- ROI: length, pixel intensity range, ... NS!
- What are the X things to have someone external work on it (feedback)
- Get to that point and then pass off to Marcus
- Problems: error handling, file-naming (no unique name)
- Running RE as background/script? Yes, but have to solve multi-repository