2008-01-11 Omero Review Meeting
Attending: Alexa, Andrew, Cat, Chris, Colin, Donald, Jason, Jean-Marie, Josh, Melissa, Will
Agenda
- In Attendance:
- General
- Upcoming vacations and releases
- Brian: January 9th to the 26th
- Chris: January 12th to 28th
- Jason: US Meetings Jan 16 - 25
- Donald: January 15th-ish to Febuary 1st-ish
- Upcoming vacations and releases
- Jason starts writing grant upon return. Will need figs, words ideas.
- Status Report
- OMERO.server
- OMERO.insight
- OMERO.importer
- OMERO.webadmin
- Scripting Engine
- OMERO-FS
- ome xml
- Website changes
- Bio-Formats
- Beta 2.3 Notes of Interest
- Downloads--
- Update for REGISTRY
Action Items
- Everyone please make sure your 3.0 tickets are up to date with what you are working on
Notes
- General
- Grant writing time: very annoying mode starting Feb. 1
- Servers getting more hits
- 20 downloads of the server
- jason will
- Server (Josh)
- Annotations & Search
- interesting for will and jean-marie
- Delete
- means different things to different people
- how flexible for the user
- site-wide configuration
- dev
- Windows build ticket:855
- now works
- may break, since we don't test it
- Annotations & Search
- Server (Chris)
- Improving trac documentation
- Upgrading Mac OSX packages
- binary repositories
- Dundee hosts should be maintainability by multiple users
- Projections
- Create a few projections available on mage
- UI side can start working with them
- so that we can test visually
- Timeline: soon
- Improving trac documentation
- Server (Alexa)
- Working on SSL connection for LDAP
- A bit slow; perhaps not for us
- Why? Overhead on every call
- Answer? Sessions.
- Insight (Jean-Marie)
- some clean-up post beta2.3
- start testing beginning of next week.
- wildcards, case sensitivity
- viewing multiple images in same viewer
- should be available if we push out a server patch
- some things to make the life of the user easier
- starts to play with search API early next week
- Insight (Donald)
- reworking some of ROI tool interfaces
- using SVG tools on images (cell counting, etc.)
- done: ~1.5 weeks
- test builds towards the end of the month
- move on to scripting engine after that
- Monday talk; josh+donald
- J-M: good example data from Michael for testing the scripting engine
- making something that would help Anne Carpenter, etc. (module)
- couple days work to start opening it up
- it'd be huge
- (aside) Multiple pixels new structure
- Use something temporary for Beta3
- Upgrade for Beta4
- Similar situation to tagging
- Something visually to understand the problematic
- Importer
- Brian absent
- Melissa & new formats
- incell --> implies work from several people to get Screen/Plate/Well in
- OMERO.fs (Colin)
- Playing with FS events on mac; only provide roughly what's happening
- Examining inotify under linux
- will contact Josh about using interfaces (email)
- Jason handles the contractual
- Andrew
- OME-XML
- Trying to get breaking changes left over from September reeady
- Need to review some of the specific types (int/float)
- Website
- Following up on email to nitpick, the new website has been committed
- Goal: greater prominence for all products
- Generated documentation for 2003 schema to prevent SVG warnings
- on going task: sorting through many websites, making overview, homogenizing via css
- looking into plone instance on necromancer (permissions, editing)
- reviewing site with Jason; adding screenshots
- Following up on email to nitpick, the new website has been committed
- OME-XML
- Bioformats (Melissa)
- big commit is in
- adding changes to OME-XML (compiles but incomplete)
- looking for unplaced metadata
- using OMERO?
- unsure. Melissa has her own
- New server version
- fixed upgrades.url
- run.sh fix
- Annotations upgrade (3.0-Beta3)
- MBL data on older systems
- move to tagging
- way to distinguish different sites (upgrade heuristic)?
- must clear the CG/C table since it's leaving the UI (?)
- may need to fiddle with tags -> descriptive annotation
- wait 3-4 weeks before deal with upgrade
- need to get information on what's in the table
- secodn phase on structuring information more?
- MBL data on older systems
- ProtocolEditor (Will)
- ontology work for now finished; waiting on Phenote integration
- interested user
- demo for Michael
- Please review your tickets