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Import of .mrxs files (slide scanner 3D-Histech)

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Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Import of .mrxs files (slide scanner 3D-Histech)

Postby jhehl » Wed Oct 16, 2013 1:35 pm

Dear all,
we would like to import images produced by the slide scanners from 3D-Histech (.mrxs) into Fiji. Is there any chance that this will work in near future? Where should we upload some sample files?
Best wishes
Joachim
LMSC ETH Zurich
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby mlinkert » Fri Oct 18, 2013 1:26 pm

Hi Joachim,

Support for .mrxs data is planned but not completed, as noted in this ticket on our issue tracking system:

https://trac.openmicroscopy.org.uk/ome/ticket/4121

If you would like to receive an automated email each time the status of that ticket changes, please let me know and I will CC you.

If you are interested in uploading sample datasets, the easiest thing to do is to create a Zip file for each dataset and upload the Zip files to:

http://qa.openmicroscopy.org.uk/qa/upload/

Regards,
-Melissa
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby jhehl » Mon Oct 21, 2013 9:20 am

Dear Melissa,
yes, please put me on the list.
Thanks
Joachim
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby mlinkert » Mon Oct 21, 2013 1:08 pm

Hi Joachim,

You should now receive an email with "[OME] #4121" in the subject line each time that ticket is updated.

Regards,
-Melissa
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby brad.polant » Mon Aug 18, 2014 12:07 pm

Did this support ever get complete?
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby mlinkert » Mon Aug 18, 2014 10:49 pm

No, .mrxs datasets are not yet supported. If you would like to be automatically notified of updates, please let us know and we'd be happy to CC you.
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Re: Import of .mrxs files (slide scanner 3D-Histech)

Postby hflynn » Mon Jan 11, 2016 11:44 am

Anyone interested in this topic may be interested to read our latest blog post which details the work we have put into this and explains why we have not yet delivered support,

Thanks,

The OME Team.
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