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You are here: Home Community Minutes Mini Group meetings OMERO/HIC Meetings 2011.06.10

2011.06.10

Attending: Andy, Josh, Simon

  • No agenda

    • Josh wants to go over CLI tools
    • Simon liked the meeting.
      • Andy: Worthwhile session
      • Simon: Few weeks earlier would have also been useful.
      • See that section of contributors
  • Andy

    • Trying to get the data
    • will try to write out their workflow
      • Cleaning from the genetic side
  • Josh

    • schema files missing types
      • Andy: in the future will have all the types
      • Genetics won't have types
      • Josh: Matrix like in nature?
    • Andy:
      • adding to demo would be IP
      • queries various columns based on conditions
        • specific bp range in a date range (symbolic names)
        • subset of columns
        • just as SQL? (case collisions? Not really.)
        • code completion?
      • webpage
        • auditlog as a query
        • don't want the system auto-generating more auditlog entries.
      • joins?
        • No. Must do it in-memory.
      • Add exporting to CSV (with proper delimiter)
  • Andy:

    • Workflow meeting was taking most of recent time
      • Need to do some transcribing.
      • Away from next week to start of July.
      • Continue with import / export
    • Will load sample genetic data early next week.
      • Not the final data, but is representative.
      • Josh: perhaps plink to hdf5 converter?
    • Not sure if we want to store plink data in OMERO
      • Do we gain anything?
      • Josh: eventually with map/reduce it will beneficial to read it in
        • and copy chunks to the cluster.
  • Simon

    • Starting Monday to work on a web demo
    • First thing Andy works for?
      • Audit log: user id --> name --> who ran a query last?
      • Change table names to actual names.
      • Pick on a user and filter
      • More about the auditlog
      • Simon: that's the differentiator
      • Andy: import -> export -> audit trail
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