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You are here: Home Community Minutes Mini Group meetings Knime 12-09-20 Skype meeting

12-09-20 Skype meeting

Attending: Michael, Martin, Christian (later), Josh, J-M

  • interaction with the server - 10:04 UK

    • less insight-specific
    • send email? list
    • make tickets and discuss how to evolve services
    • knime day? (headless) Example sent to J-M
    • issue with some component?
  • status - 10:07 UK

    • what's working
      • implemented methods sent as examples
      • works fine for small images (standard ones)
      • getDataset/getPlane
      • for start have a reader that does everything we need for basic images
    • issues to handle next - 10:10 UK
      • logger: knime uses their own logging (overwriting). Add all to existing ticket.
      • timeout for getImage (unplug network)
        • pop-ups to reconnect as plugin?
        • handle it yourself?
        • Answer: exception, no GUI actions when in headless mode
      • examples to exit GUI (sent on bus)
        • use it or not?
        • ok. don't do it if you want more interaction. Improve documentation in example.
      • Linux
        • known error?
        • Josh: send bug.
        • J-M: create ticket
  • Christian joined.

  • Headless - 10:18 UK

    • Did some tests; some problems
      • j-m to create tickets.
      • Memory usage?
    • Command string with parameters
      • J-M: second step of what we wanted to do
      • once headless in place, don't just parse credentials and node ID
      • Christian: upload workflow to OMERO
      • pass to knime image ids and path to workflow; KNIME handles the rest
      • problem in knime headless that a frame in insight is instantiated
      • w/o that can do some parameters in the console already.
    • J-M: pass workflow ID and KNIME is responsible
      • pass session rather than password
      • christian: this is possible.
      • Jean-Marie:
        • add support for session
        • provide session example
  • J-M to check out to attend ImageJ days for further discussion?

  • Josh in Luxembourg?

  • import from memory

    • imglib (ask Melissa) for B-F reader.
  • ROI

    • Josh: send e-mail to sciJava
    • Knime: heavy user of label.
  • 10:36 UK

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