2017-06-06 Tuesday Team Meeting
Dundee: Will, Petr, Dominik, Mark, Kenny, Jean-Marie, Andreas, Simone, Roger, Balaji,
Remote: Sebastien, Liza, Wilma, Eleanor, David, Simon, Melissa, Emil, Josh,
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Spaces
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Files/Formats/OME Files (Sebastien)\
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Bio-Formats 5.5.2
- Trello board with few bug-fixes. External PR
- Small release soon
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OME Files 0.4.0
- Tiling api and options work
- Testing tiling benchmarks
- 2 benchmarks - need to make scripts etc reusable
- Java code for writing large images getting reviewed today
- Later this week will test C++ code
- CMSO multimot prep for Essen? Workshop in 3 weeks
- preparatory work on OME FIles Python, OME-TIFF companion filesets
- Tiling benchmark
- CMSO/MULTIMOT workshop
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Bio-Formats 5.5.2
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Metadata (Josh)
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Working on 0.4.0 release
- No known blockers
- Spin up 5.3.0 and start importing soon
- Most remaining TODOs are ‘analysis’. Maybe rename board?
- Upcoming outreach (training & conferences)
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General "analysis" strategy - proteosome
- Priorities of above will determine which servers to focus on
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Working on 0.4.0 release
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OMERO 5.3.2
- Cleaning up 5.3.3 board, focus on CLI and major bugs
- 5.3.3 probably last release before 5.4.x ‘roles’ becomes develop
- Dom is looking at Java client code to deprecate - need to announce when known
- Alex’s ImageJ plugin is lighter-weight tool for browsing P/D/I and opening image in regular IJ viewer.
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Outreach
- Cambridge workshop 7th & 8th December.
- Cytohack 28-29 June
- Big Data in Biology 25-27 Sep
- Internal training Dundee in June? TBD with Graeme
- IDR into - 28th June - Cambridge
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Files/Formats/OME Files (Sebastien)\
Other releases/upgrades:
Figure
- Release soon, few features merged
- Testing dev console scripting
Iviewer
- Good feedback from meeting
- 20th June next release
- viewer-ng board in Trello. Add to inbox
- We will maintain omero_fpbioimage 3D viewer. New board created
new website
- e-mails discussing next steps
- Blockers for production?
- Will go live, with old website still available
- Ongoing styling work to be integrated in next few weeks
- Moving away from Foundation framework
- New urls likely for ome-documentation & staging
- Workflow for docs PRs won’t change
Sysadmin (current board and recent PRs)
- Various web apps installed on nightshade. FBbioimage, webtagging, iviewer & figure updated
- ci upgraded and now open to public with latest Jenkins and plugins
- Demo server deploy ongoing - deadline on Friday
Glencoe Update (Chris)
- Thanks to OME team for the meeting
- Microservices work. See thumbnails example https://github.com/glencoesoftware/omero-ms-thumbnail
- Next: tiles microservice
- Populate metadata fixes - for resolving on images
- Josh: auto parse ID as Number or Name
POTN review (20-25 minutes plus 15 mins questions max)
- Closing POTN 2017 board if there are no objections.
- Josh to migrate Day 3 cards and close board.
- POTN feedback for OME 2017 board should be added by close of business today.
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)
- Josh: Private emails - redirect to public lists