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You are here: Home Community Minutes Conference Calls 2017 2017-06-06 Tuesday Team Meeting

2017-06-06 Tuesday Team Meeting

Dundee: Will, Petr, Dominik, Mark, Kenny, Jean-Marie, Andreas, Simone, Roger, Balaji,

Remote: Sebastien, Liza, Wilma, Eleanor, David, Simon, Melissa, Emil, Josh,

  1. Accepting minutes from last meeting

  2. Project Timelines (2-3 minutes each)

  3. Spaces

    1. Files/Formats/OME Files (Sebastien)\
      1. Bio-Formats 5.5.2
        • Trello board with few bug-fixes. External PR
        • Small release soon
      2. OME Files 0.4.0
        • Tiling api and options work
        • Testing tiling benchmarks
        • 2 benchmarks - need to make scripts etc reusable
        • Java code for writing large images getting reviewed today
        • Later this week will test C++ code
        • CMSO multimot prep for Essen? Workshop in 3 weeks
        • preparatory work on OME FIles Python, OME-TIFF companion filesets
      3. Tiling benchmark
      4. CMSO/MULTIMOT workshop
    2. Metadata (Josh)
      1. Working on 0.4.0 release
        • No known blockers
        • Spin up 5.3.0 and start importing soon
        • Most remaining TODOs are ‘analysis’. Maybe rename board?
      2. Upcoming outreach (training & conferences)
      3. General "analysis" strategy - proteosome
        • Priorities of above will determine which servers to focus on
    3. OMERO 5.3.2
      • Cleaning up 5.3.3 board, focus on CLI and major bugs
      • 5.3.3 probably last release before 5.4.x ‘roles’ becomes develop
      • Dom is looking at Java client code to deprecate - need to announce when known
      • Alex’s ImageJ plugin is lighter-weight tool for browsing P/D/I and opening image in regular IJ viewer.
    4. Outreach
      • Cambridge workshop 7th & 8th December.
      • Cytohack 28-29 June
      • Big Data in Biology 25-27 Sep
      • Internal training Dundee in June? TBD with Graeme
      • IDR into - 28th June - Cambridge
  4. Other releases/upgrades:

    1. Figure

      • Release soon, few features merged
      • Testing dev console scripting
    2. Iviewer

      • Good feedback from meeting
      • 20th June next release
      • viewer-ng board in Trello. Add to inbox
      • We will maintain omero_fpbioimage 3D viewer. New board created
    3. new website

      • e-mails discussing next steps
      • Blockers for production?
      • Will go live, with old website still available
      • Ongoing styling work to be integrated in next few weeks
      • Moving away from Foundation framework
      • New urls likely for ome-documentation & staging
      • Workflow for docs PRs won’t change
    4. Sysadmin (current board and recent PRs)

      • Various web apps installed on nightshade. FBbioimage, webtagging, iviewer & figure updated
      • ci upgraded and now open to public with latest Jenkins and plugins
      • Demo server deploy ongoing - deadline on Friday
    5. Glencoe Update (Chris)

      • Thanks to OME team for the meeting
      • Microservices work. See thumbnails example
      • Next: tiles microservice
      • Populate metadata fixes - for resolving on images
      • Josh: auto parse ID as Number or Name
  5. POTN review (20-25 minutes plus 15 mins questions max)

    1. Closing POTN 2017 board if there are no objections.
    2. Josh to migrate Day 3 cards and close board.
    3. POTN feedback for OME 2017 board should be added by close of business today.
  6. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

    1. Josh: Private emails - redirect to public lists
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