2017-05-02 Tuesday Team Meeting
Dundee: Will, Petr, Dominik, June, Kenny, Simon, Ola, Mark, Jean-Marie, Simone, Remote: Josh, Sebastien, Andreas, David, Eleanor, Wilma, Melissa, Chris, Stick, Emil
Agenda - 2:00pm Start
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Spaces
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Files/Formats/OME Files (Sebastien)
- 5.5.0 next milestone - mostly done
- Next: rebase Columbus reader from IDR, issues with paths on Windows.
- Either release 5.5.0 without this, or release partial working reader
- BF update site to test deployment of snapshot before release
- Release on Thursday or push to Monday
- Tiling - Need to handle writing of tiles of full image size
- CMSO - pypi library to read & write tracks
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Metadata (Josh)
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idr0034/hipsci importing to prod37 this week
- 1 more dataset for users meeting
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ome2017 (on pony) in the process of being brought up
- 5.3 prototype for testing
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idr0034/hipsci importing to prod37 this week
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OMERO 5.3.2 (J-M)
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Focus on thumbnails improvement in web and CLI fixes
- Release on 16th/17th May (week after BF)
- More focus moved to web apps
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Focus on thumbnails improvement in web and CLI fixes
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OMERO 5.4.0-m1 (Petr/Mark)
- adjusted graph operations to better handle light admins, still being tested
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changed server to improve performance and better fit into existing permissions code
- included adjustment so no light admin powers survive sudo to normal user
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drafted ugly but effective improvement of import speed
- will open PR once previous is merged
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block light-admin-makes-light-admin at server?
- can do if necessary but could take a few days
- JM - do internal milestone first
- Tag what we have now if happy
- Petr - couple of issues - PR opened for one. Test skipping?
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next steps
- more performance testing and profiling following latest changes
- once more PRs are tested and merged, have Josh do general code review
- Will: need to fix webadmin form for create user by light-admin
- Outreach
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Files/Formats/OME Files (Sebastien)
Other releases/upgrades:
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Figure
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New release scheduled for 18/05
- Export figure / create new image in OMERO
- PR for editing background/page colour
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New release scheduled for 18/05
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iviewer
- design issue
- PRs in progress to address UI design
- Some issues scoped for later, e.g. Projection.
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new website
- PR and feedback on Explore page
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Sysadmin (current board and recent PRs)
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Nightshade redeploy
- Progress on config
- Filesystem layout postgres etc
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Jenkins Secvulns
- Firewalling until issues resolved / patched
- Team Permissions XSS attacks - read-only
- Petr - can we run builds if ‘read-only’
- Josh - not sure of impact. Will try not to be disruptive
- Mailman issues - needed restart
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Nightshade redeploy
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Figure
Glencoe Update (Chris)
- Webinar last week - will publish soon
- Mainline: thumbnails etc.
- JCB dataviewer moving off physical hardware
- Jenkins upgrade - plugin cleanup
- Check docs re: starting up (some things need to be on/off)
- Host key verification now vastly more aggressive (slave communication)
User meeting update
- Workshops
- Discussion this morning, will update cards
- T-shirts, lanyards etc.
- Use case “I have resource & data. Want to integrate with OMERO but not start from scratch”
- Consider this use-case in workshops.
- 15th May for draft workshop run-throughs