2017-04-11 Tuesday Team Meeting
Dundee: Petr, Dom, June, Jason, JM, Mark, Helen, Simon, Kenny, Balaji Remote: Ola, Roger, David, Chris, Andreas, Melissa, Wilma
Agenda - 2:00pm Start
Accepting minutes from last meeting
Project Timelines (2-3 minutes each)
Spaces
-
Files/Formats/OME Files
- David: preparation for 5.4.1 release, aiming for the end of this week. Still one external PR
-
Metadata (Simon)
- Simon: new dataset and annotations. Docker server is ready to go for feature calculation.
- Jason: new datasets are coming in.
-
OMERO 5.3.1 (J-M)
-
ongoing IDR-omero reconciliation
- J-M: There are several PRs opened to get thumbanils and metadata to main line.
-
bugs fixing
- J-M bug in sharing noticed recently
- Mark: reviewing cards from inbox
-
ongoing IDR-omero reconciliation
-
OMERO 5.4.0-m1
-
Roles work not included in 5.3.0
- Mark: focusing now security system handling model objects. We will have to look at performance later. Few integration tests are failing.
-
database triggers approach prevents privilege elevation via update service
- getting this working was the most challenging pre-5.3.0 blocker
-
Petr is checking existing
can*
methods on OMERO model objects-
Mark's tests of
can*
methods now pass -
Mark to investigate Petr's failing
can*
test -
Mark to add
canChgrp
,canChown
-
Mark's tests of
-
performance improvements to come later, perhaps by,
- caching more information with session
- replacing Java checks with more database triggers
-
roles devspace fails a couple of OmeroWeb integration tests
- hoping for Will's help in understanding them once he's back
-
Roles work not included in 5.3.0
-
Outreach
- Jason: Josh in Janelia, will present next week
- Simon/Kenny: Ansible meetup in Edinburgh.
- J-M: keeping an eye on other meetings deadlines
-
Files/Formats/OME Files
Other releases/upgrades:
- Worked on release app template
-
Figure:
-
Prep for release.
- J-M: rois in figure will be loaded using API (omero-marshal) in next version
-
Prep for release.
-
iviewer
- web-dev-merge
-
ongoing work on permissions
- Mark: more testing on the go
-
new website
- Helen: Petr signed off on omero pages. PR will be merged this afternoon. Lisa will then work on graphics and development sections.
- J-M/Helen: There are few cards for suggestions.
- Helen is away next week
- Sysadmin (current board and recent PRs)
- Kenny: nightshade VM facilitating 5.3.0 tested successfully. During downtime we will sync data with GPFS.
Glencoe Update (Chris)
- Chris: Preparing PathViewer webinar, Work on BF and horizontal scaling.
User meeting update
- Jason: trying to get final list of titles of presentations. Publishing agenda next week.
-
analysis Jupyter/R-matlab. Notes
- Balaji: trying to set up R-matlab with Jupyter, so far successful with installation but facing some issues with docker.
AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)
- Monday morning coffee 10:30