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You are here: Home Community Minutes Conference Calls 2017 2017-04-04 Tuesday Team Meeting

2017-04-04 Tuesday Team Meeting

Dundee: Will, Kenny, Jason, Jean-Marie, June, Balaji, Roger, Helen, Ola, Simon, Simone, Dominik Remote: Eleanor, David, Sebastien, Liz, Chris, Stick, Andreas,

Agenda - 2:00pm Start

  1. Accepting minutes from last meeting

  2. Project Timelines (2-3 minutes each)

    1. Spaces

      1. Files/Formats/OME Files (Sebastien)
        • CMSO mulitmot - coupling imaging and analytical data
        • Followup - get experimental metadata files.
        • BF- external PR from mpi. Reader addition
        • OME-Files - Oxford user consuming OME files
        • Minor release soon with features requested by community
        • Timeline not set yet, before Dundee meeting would be nice
        • JM: meeting workshop on OME-Files?
        • Jason: modalities and complexities of imaging acquisition increased a lot since start of OME project.
      2. Metadata (Eleanor)
        • IDR meeting last week
        • Submissions: biostudies submission portal. Met with biostudies.
        • Analysis: use-cases discussed, good progress
        • Working on two datasets, idr0026 (immunotherapy) and idr0034 (HipSci)
        • Release scheduled for next week with idr0026, annotation updates and update deployment with a separate web user
        • Next months work
          • More datasets.
          • Working with BioStudies so they can receive imaging submissions
          • Upgrade to jupyter to allow whitelisting users
          • Ola - upgrade the version of OMERO used in IDR to 5.3.0
          • Simon - calculating WND-CHARM features on more datasets
          • Proteasome analysis.
          • Preparing presentation for users’ meeting.
      3. OMERO 5.3.1
        • 5.3.0 Release last week.
        • Looking to port useful IDR features back into mainline. Thumbnailing etc.
        • Matlab (Balaji) and R (Dominik) for analysis - Users’ meeting prep
        • Moving more functionality to OMERO gateway - SPW features
        • Jason: showing workflows using full stack, using IDR / big data
        • Part of improving data-in, data-out, data-download “the straw”
        • Weekly analysis meeting starting on Friday
        • JM: web apps pip installable -> Douglas doing same for webtagging
      4. Outreach
        • Josh at Janelia
        • Simon and Kenny going to Ansible meeting
    2. Other releases/upgrades:

      1. Figure
        • Updating release board for using Pypi
        • Looking to release on 17th April
      2. Iviewer
        • Working on ROI permissions
        • Will: Adding ROI support to JSON API
        • Aim to release first week of May
      3. new website
        • Started weekly meetings on Mondays
        • Updating layout of OMERO section
        • Currently deploying via github pages to build & host jekyll site
        • JM: will eventually migrate into new site.
        • Helen: more content work in progress
      4. Sysadmin (current board and recent PRs)
        • Kenny: separate web VM for 5.3.0 on nightshade
        • Need to setup SSL for logins etc.≠
        • School need to update to latest Insight before server upgrade
        • Specs and deployment firmed up for new nightshade on RHEL 7 VM.
      5. Glencoe Update (Chris)
        • Pathviewer webinar at end of month
        • 5.3.0 investigation for pathviewer
        • Horizontal scaling with Douglas etal
      6. Mtools testing and new build needed for nightshade upgrade
    3. User meeting update

      • Workshop schedules on gdocs
      • Some external workshops
      • Tricky to organise 3 sessions]
      • Finish with “free-for-all” depending on demand
  3. Reverse OSAR (30-60 mins)

  4. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

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