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You are here: Home Community Minutes Conference Calls 2017 2017-02-14 Tuesday Team Meeting

2017-02-14 Tuesday Team Meeting

Dundee: Kenny, Petr, Ola, Balaji, Mark, JM, Helen, Simon, Roger, June, Simone, Jason, Remote: Sebastien, Eleanor, Wilma, Will, Melissa, David, Emil, Chris, Andreas

Agenda - 2:00pm Start

  1. Accepting minutes from last meeting

  2. Project Timelines (2-3 minutes each)

    1. Spaces

      1. Files/Formats/OME Files (Sebastien)

        1. OME Files 0.3.0
          • Seb: Just out the door.
            • Next steps: start using/consuming this, benchmarking for paper revision.
            • C++ implementation way better than Jace for real/large data
            • Couple of fixes to come
        2. Bio-Formats 5.3.4
          • Just integrated PR fixing regression
          • Early next week for release planned, then moving on patch releases
          • Discussions to come re: tidying, Big-images and tiling
      2. Metadata (Eleanor)

        • IDR demo33 release - annotation fixes
          • fixing annotation bugs mainly (changing annotations for mapr, update, delete)
        • Paper reviews back
        • Next IDR release - more datasets, new Embassy cloud set up
          • Waiting to hear back from EBI - setup ongoing
        • Plans for more analysis - genes related to proteasome (~30 genes) - analysis of existing phenotypes and looking at features from images related to these genes.
          • Jason: Trying to exercise the datasets in the IDR
        • Simon: Sysadmin docs for IDR being written, linked from paper
      3. OMERO 5.3.0 (J-M)

        1. 5.3.0-m8 available
          • out today, to test release workflow (pdfs etc)
          • web API change (support for well)
          • Bio-Formats 5.3.3 (not 5.3.4) -
        2. doc work ongoing
          • can people look at unattached cards and join cards if they can
          • ice 3.6 will be default, so docs to clean/update ice 3.5 references
        3. New Roles (Mark)
          • preventing privilege elevation in user management turning out to be difficult
            • made progress but will probably take this week too to get that working
          • Will started work on webadmin side
          • Will has created new UI, PR open (light-admins)
            • Helen: Can we document it now?
            • Mark: Probably, though perhaps not screenshots.
            • Petr: ppt and card explains all the permissions
            • JM: same for change ownership
          • Balaji has created some videos for import and import-as from the CLI, will be useful for facility managers. To be published.
      4. Outreach

        • Josh at neubias (Lisbon)
        • ELMI coming up. Workshop? (Dubrovnik) 23-26 May
          • Petr: Last meeting was useful - lots of interest
          • Seb: Overlap with user meeting (31 May-01 June)
        • (Cambridge workshops end of June)
    2. Other releases/upgrades:

      1. Figure
      2. Iviewer
        • Some PRs open, ROI workflows improving, daily cowfish deployments
      3. Sysadmin
        • SLS infra issues
    3. Glencoe Update (Chris)

      • Big focus at the moment are RO and scalability issues
      • PathViewer bugfix releases
    4. #POTN Users Meeting (Jason)

      1. Workshops: expect same format.
        • Lightning talks (morning), Invited (afternoon)
        • Thoughts appreciated on format of workshops
  3. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

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