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You are here: Home Community Minutes Conference Calls 2015 2015-05-12 Tuesday Team Meeting

2015-05-12 Tuesday Team Meeting

Dundee: Petr, Kenny, Mark, Ola, Gus, Jean-Marie, June, Simon, Helen, Roger, Balaji, Will Remote: Ian, Colin, Kelli, Josh M, Melissa, Wilma, Eleanor, Andreas, Curtis, Josh B, Emil

Agenda - 2:30pm Start

  1. Accepting minutes from last meeting

    • accepted
  2. Project Timelines (2-3 minutes each)

    1. Core (incl. CI & QA) - 14:30 UK

      • 2 weeks until freeze
      • 7 cards end of this week
      • +100 tickets
        • Josh M: some will have to be pushed, though 5.1.3 is already quite full, maybe clean up tickets after Paris
      • Big pushes to watch out for?
        • Josh M: remember that QA requires adequate warning for testing
        • Jean-Marie: … and that Petr is off next week
        • Ola: read-write groups requires testing
          • Jean-Marie: will discuss tomorrow, may need to be pushed
        • Jean-Marie: also need to discuss ROI / annotations
      • Melissa: in good shape, few tickets remaining
    2. Glencoe Update (Chris) - 14:34 UK

      • Josh M: populate metadata script work in progress, plenty of bugfixing
      • Josh M: the populate metadata script will be needed for Eleanor
    3. Repositories - 14:36 UK

      1. Virtual Microscope/teaching

        • nothing new
      2. IDR Project (Eleanor)

        • working on getting all metadata for Sysgro yeast and JCB proteome plasticity high content screens
        • refinement of a standard template for study metadata
        • starting to transfer Sysgro dataset (11 Tb) to EBI then Dundee.
        • issue of getting ontology in OMERO
        • Josh M: further discussion about hardware, installation probably to start in early June. Request to focus on Storage before compute.
    4. FLIMfit/OPT (Ian) - 14:38 UK

      • bugfix version released
      • testing against 5.1, looking good
        • revealed some problems not specific to 5.1, so may release a 5.1-compatible version before those are fixed
    5. Bio-Formats large file sets (Sebastien B) - 14:39 UK

      • no news
    6. Other consortium timelines (5 minutes) - 14:39 UK

      • Curtis: saw Sebastien, talked with Jason and Niko at AQLM
      • Curtis: working on typed location interface instead of just passing around strings with IDs
        • progress is enabling for scijava-common
  3. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled) - 14:41 UK

    • June: Paris registration closes today, around seventy now
  4. Deployment / Public repository Paris workshop practice (Ola) - 14:42 UK

    • presentation
    • Josh M: some information good for facility admins, some is in-depth developer stuff, good to name the presentation well and make sure the audience knows what they are getting
      • Ola: will update presentation with the new title
      • Will: views, templates, etc., may not be familiar to facility admins
        • Ola: will shrink, adjust order
    • Jean-Marie: make it clear that public user does not override existing OMERO permissions system, it is an extension, not a back door
      • Ola: will be clearer about creating separate public group, user
      • Be careful in saying “override the permission system”
    • Ian: confused about “owner-agnostic” when data is still actually owned, didn’t recognize it as basically what Imperial have already done
    • Balaji: can be harder when the code is seen before the later screenshot
    • Will: make it clear that screenshots from other custom apps are not part of OMERO.web

Done 15:10 UK

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