Personal tools
  • We're Hiring!

You are here: Home Community Minutes Conference Calls 2014 2014-12-09 Tuesday Team Meeting

2014-12-09 Tuesday Team Meeting

Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

Agenda - 2:30pm Start

  1. Accepting minutes from last meeting

  2. Project Status (15 minutes max)

    1. Mainline (5 minutes)

      • Same as last week. Units still ongoing.
      • Some more breaking changes to come.
      • Mark: Graph PR is looking good. 4.4 filesets a surprise but easily fixed.
      • Images generated from scripts also cause some issues.
      • Chris: Failure conditions slightly different on dev 5_0 - E.g. OOM during transaction.
      • Josh: latest commits not backported yet.
      • JM: few issues remaining from m2 rendering in web.
      • Will: fixed today in PR 3236
      • Roger: difficult to predict m3 schedule for OME-TIFF
      • Petr: Updating scenarios for moving data (chgroup)- need to test fully (full viewer etc) after move.
      • JM: further integration tests could cover images created by scripts etc.
    2. Glencoe Update (5 minutes)

      • PR open tomorrow for open-source team to review.
      • Various BF fixes to backport.
      • VSI in particular
      • More pathology changes to discuss in new year
    3. Consortium Update (5 minutes)

      • Nothing new
  3. Demo of OPT from OMERO by Yuriy

    • Acquisition on 1 machine (Labview), registration (Labview), OME-TIFF generation in Matlab.
    • Every image has 2 channels (channels as separate iamges in OMERO) - diseased zebrafish.
    • FBP (filtered back projection) reconstruction with data loaded from OMERO or from disk
    • Downsample option allows faster processing (E.g. quick visualisation without GPU)
    • Open Icy to view 3D reconstruction.
    • Multiple channels can be merged etc.
    • Can save volume from Icy or ImageJ
    • Images in OMERO are Z-stacks with each plane being a different rotation (64 planes)
    • Approx 2k x 1k pixels source images
  4. AOB (5 mins max - technical discussions should be highlighted to relevant people and rescheduled)

    • None!
Document Actions