Personal tools
  • We're Hiring!

You are here: Home Community Minutes Conference Calls 2013 2013-02-05 Tuesday Meeting

2013-02-05 Tuesday Meeting

Dundee: Jean-Marie, Roger, Kenny, Gus, Colin, Mark, Blazej, Andrew, Pets, Elwood (notes), Will, Simon, Jason Remote: Josh, Douglas, Melissa, Andreas, Carlos, Stick, Curtis, Ian, Mark Hiner

Dundee: Jean-Marie, Roger, Kenny, Gus, Colin, Mark, Blazej, Andrew, Pets, Elwood (notes), Will, Simon, Jason Remote: Josh, Douglas, Melissa, Andreas, Carlos, Stick, Curtis, Ian, Mark Hiner

  1. Accepting minutes from last meeting

    • Done
  2. FS Update (Josh/5 min) - 14:31 UK

    • Josh: demo for Jason of FS code. Performance was better than expected, another demo during developer meeting at end of month. Jason’s Wish list -> ticketed -> story. Tagged proper release for the demo. Once a week google hangout, video makes things nicer.
    • Jean-Marie: 14:00 Friday hangout for FS. Do a test in the morning.
    • Jason: good seeing FS running and performance from raw file system.
    • Jean-Marie: Kenny VM hooked up for team by end of month, can discuss later
  3. Glencoe Update - 14:39 UK

    • Focus on FS (josh & melissa)
    • beta.jcbdataviewer progress made. Feb 18th deadline
    • Very large data acquisition site / viewer for clinical diagnostics. Blood test complex image looked at and diagnosis made.
    • Interest from digital pathology in USA.
    • Recruiting continues
  4. Satellite Update - 14:44 UK

    • Response needed for Wilma to book travel arrangements for satellite by end of this week
    • Agenda will be in ome-docs folder soon, comments welcome
  5. WND-CHRM demo (Simon Li) - 14:47 UK

    • Notes
    • musical interlude due to technical difficulties
    • Simon presented his cat-classifier. Will is a cat!
    • Next few weeks:
      • Moving towards visualizations (of features, etc)
      • Storing feature vectors, weights (security issues)
      • Usability of typing in the classifier name, etc.
      • How to work with multiple-channels (rather than just concatenate them)
      • How to work with ROIs rather than Images (and global image information).
        • Hierarchy within gigapixel image.
    • Longer / developer-focused
      • Features/Search APIs to write your own algorithm?
      • Registry (like for scripts) but focused on analysis
      • Who is the API aimed at? How abstracted? (...cross-validation within OMERO?)
      • More UI stuff: minimize changes to Web in OMERO? (then use script dialog)
        • Would be nice to have that more interactive
        • Query for a list of classifiers and then select from that, or drop down of images, etc.
        • Multi-stage script dialogs (post-failure, etc) similar to wizard, human-feedback.
    • Comments - 15:12 UK
      • Jason: color issue is important. Ilya & Bob have both worked on this.
      • API unification difficult with only 2 implementations, omero.searcher and wnd-charm
      • Curtis to ask LOCI folks for data. (Ian as well)
      • Will: dimensionality? Hack via a projection? Computer vision algorithms are typically 2D
      • Jason to contact Ivan. Highlight differences and show at end of the month.
  6. Any other business (<5 mins) 15:25 UK

    1. OME docs development branches: master/dev_4_4/develop?
      • Josh: Sebastien & I ran in to this preparing for 4.4.6
        • Master is live, doc is released live. If you open a PR against it.
        • Master merged in to dev_4_4 to avoid 3 PRs for 1 change.
        • Hold off until spoken to Helen.
      • Will: have something similar in the ome.git code repo
    2. Whiskey milestones - 2 or 3; use keywords
    3. Standup agenda setup i.e. Alternate agenda writer, prepare in the evening ready for the early starts
      • Rotate on weekly / daily basis.
      • Add PR when you open it and want it tested.
      • Setup a rotation 2-3 days each teach next person things to include / check.
  7. Done 15:51 UK

Document Actions