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You are here: Home Community Minutes Conference Calls 2012 2012-01-24 Tuesday Meeting

2012-01-24 Tuesday Meeting

Attending: Liza, Josh (notes), Chris, Andrew, Colin, Emma, Jean-Marie, Ola, Scott, Elwood (notes), Simon, Will, Stick (14:16), Curis (14:37)

Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

Housekeeping Pre-Meeting - 2pm Start

  1. Matters Arising (<10 mins)

    • Will: Reply to Manz about isUserconnected DONE post
    • Ola: reply to ticket:6103 thread DONE/in progress
    • Will: update attachment.zip with ann.file fix DONE post
    • Chris: create mailing list
    • Will: web UI talk (see talk list)
    • Mark the milestones
    • Jason: email the community about the deadlines
    • Andrew: Update hiring button to ribbon - Done - CSS would not work on 50% of browsers, reworked using image and image-map
    • Andrew: list for next week of model changes In Progress Requirment/Stories/Tasks created see #7836
    • Andrew: get real cost of booths - Done - mailed to Emma
  2. Email and Forum Review - checked at 10:55 (5 mins)

    • Email -

      • Re: [ome-devel] OMERO-Matlab: security bug
    • Forums -

    • QA -
      link

      ID  Status  User/email  Type    Created Selected file   Comment Error
      4189    new m.porter@dun... Insight 4.3.3   2012 01 20  -   I'm sometimes getting a messag...   -
      4141-4188   new k.j.z.hands@... Insight 4.3.3   2012 01 20  D - 4(fld 2 wv YFP - YFP).tif   -   omero.ResourceError ...
      4139    new zahraa_alaya... Insight 4.3.3   2012 01 20  -   -   java.lang.Exception: org....
      4129-4138   new j.s.j.wilson... Insight 4.3.1   2012 01 19  ...20110119puro1-800-9_R3D_D3D.dv   These files won't import. Jam...    omero.ResourceError ...
      4128    new unknown Importer 4.3.1-6d4b 2012 01 19  ...ivecells_efhd1ybx_01_05_R3D.dv   -   omero.ResourceError ...
      4126    new jacques.pecr... Insight 4.3.3   2012 01 17  -   Saving a comment on an other u...   java.lang.Exception: org....
      4125    new unknown Web 4.3.3-ice3  2012 01 16  -   -   Traceback (most recent ca...
      

Agenda - 2:30pm Start

  1. Accepting minutes from last meeting

  2. Introduction to Chris MacLeod and Liza Unson (5 mins)

  3. Sprint Bug Report (10 mins)

    • Define bug limit (>=100) after which we need a week of bug fixing?
    • Copyright PR 71
    • Version numbers. PR 67
    • Bug numbers: 49 closed in last week, (77 tickets closed in total), 82 bugs remaining (5 blockers, 8 critical)
  4. Talk by Curtis: Hackathon Updates (45 mins )

  5. Glencoe Update (Brief 5 Mins)

  6. Minigroup Updates (Brief round table, only raise urgent discussion points, 10 mins)

  7. Satellite Update (Brief round table, only raise urgent discussion points, 10 mins)

  8. Any other business (<5 mins)

    • ome-scheduling calendar (Josh)

Notes

Attending

  • Liza, Josh (notes), Chris, Andrew, Colin, Emma, Jean-Marie, Ola, Scott, Elwood (notes), Simon, Will, Stick (14:16), Curis (14:37)

Notes: Housekeeping Pre-Meeting - 2pm Start

  1. Matters Arising (<10 mins)

    • Will: Reply to Manz about isUserconnected DONE post
    • Ola: reply to ticket:6103 thread DONE/in progress
    • Will: update attachment.zip with ann.file fix DONE post
    • Chris: create mailing list TABLED for AOCB
    • Will: web UI talk (see talk list) CANCELLED/TABLED
    • Mark the milestones DONE Jean-Marie marked the date on the milestone page.
    • Jason: email the community about the deadlines PENDING
    • Andrew: Update hiring button to ribbon - Done - CSS would not work on 50% of browsers, reworked using image and image-map
    • Andrew: list for next week of model changes In Progress Requirment/Stories/Tasks created see #7836
    • Andrew: get real cost of booths - Done - mailed to Emma
  2. Email and Forum Review - checked at 10:55 (5 mins)

    • Email -

      • Re: [ome-devel] OMERO-Matlab: security bug
    • Forums -

    • QA -
      link

      ID    Status    User/email    Type    Created    Selected file    Comment    Error
      4189    new    m.porter@dun...    Insight 4.3.3    2012 01 20    -    I'm sometimes getting a messag...    -
      4141-4188    new    k.j.z.hands@...    Insight 4.3.3    2012 01 20    D - 4(fld 2 wv YFP - YFP).tif    -    omero.ResourceError ...
      4139    new    zahraa_alaya...    Insight 4.3.3    2012 01 20    -    -    java.lang.Exception: org....
      4129-4138    new    j.s.j.wilson...    Insight 4.3.1    2012 01 19    ...20110119puro1-800-9_R3D_D3D.dv    These files won't import. Jam...    omero.ResourceError ...
      4128    new    unknown    Importer 4.3.1-6d4b    2012 01 19    ...ivecells_efhd1ybx_01_05_R3D.dv    -    omero.ResourceError ...
      4126    new    jacques.pecr...    Insight 4.3.3    2012 01 17    -    Saving a comment on an other u...    java.lang.Exception: org....
      4125    new    unknown    Web 4.3.3-ice3    2012 01 16    -    -    Traceback (most recent ca...
      
    • Done: 14:21

Notes - 2:30pm Start

  1. Accepting minutes from last meeting

    • DONE
  2. Introduction to Chris MacLeod and Liza Unson (5 mins)

    • Chris, aka “Stick”
    • Chris: helping Chris with sys admin
    • Liza: elvis’ daughter, redesign JCB and website
  3. Sprint/Bug Report (10 mins)

    • Define bug limit (>=100) after which we need a week of bug fixing?

      • J-M: When we reach 100 need to spend a couple of days bringing it down again
      • Pull requests in by ½ sprint to give time for review process
      • @Josh & @Colin: added Section on ReleaseProcess page (on trac) with best practice for reviewing
      • Chris: discussion on Monday on web/python side
        • By Monday / Tuesday to have them open
      • J-M: consider merging one from will related to 4-3-4 hot fixes
    • Copyright PR 71

      • Josh: Andrew’s simple but need clarification. 1. not update the files, andrew updated the visible year for the user
      • touched a lot of files updating the year, not needed until the file is modified as a general rule.
      • Andrew: thought that josh was doing something in the build to make sure the lines were preseent and had the right year, so that everything had the right year
  4. Josh: not yet, the check is a regex, doesn’t look for 2012, just for a ‘format’ dont have to be that strict. Global syntax refactoring may be an opportunity to do that.

  5. J-M: remember to update the template locally for when you create a new file. * Andrew: Search showed ones with the range, updated those effected.

    • Version numbers. [PR (https://github.com/openmicroscopy/openmicroscopy/pull/67)

      • Josh: any vetoes?
      • Josh: After tags version numbers will change
      • Ola: ticket to make sure QA works with version number changes
    • Bug numbers: 49 closed in last week, (77 tickets closed in total), 82 bugs remaining (5 blockers, 8 critical)

      • Josh: bug numbers inflated by a bit due to bio-format related issues synching
      • Josh: ant-test command in PR related to bioformats.
        • after synching from madison to necromancer
  6. Talk by Curtis: Hackathon Updates (45 mins) started 14:37

    • ImageJ2 Presentation Hackaton
    • Focus on interoperability between projects
    • Knime (KNIP, Image Processing), Icy, Ome, Bioformats
    • 13 slides done at 15:23
    • Comments/Questions
      • Chris: multiple versions of imglib git. What should one be writing against?
        • Curtis: Ignore ImgLib1 (first 1-7 iterations).
        • In repo, split code into 2. Couldn’t agree to just get rid of ImgLib1.
      • Chris: documentation was sum of code + imglib benchmarks
        • master plan? resources are based on ImgLib1
        • no release based on ImgLib2
        • Curtis: plan is that it has to get better
        • Beta of ImgLib2 with ImageJ2 is February (hard)
        • Curtis will be doing the releases (like mvn)
        • Some documentation on fiji wiki; some good javadoc in the interfaces
        • Need more and guidance; less of a clear plan. Don’t know who and when.
      • Chris: fairly powerful now, makes sense to make use of it, if it is maintainable and documented.
      • Chris: strip out ImgLib1 javadoc? and links to mpicbg, etc.
        • Curtis: better documentation, and better labelling of the POMs.
        • Chris: Max Planck sorts to the top of the list.
      • Chris: find lot of the names are easier in ImgLib1
        • Curtis: last ditch time to rename
  7. Glencoe Update (Brief 5 Mins) started 14:35

    • Emma: Liza and Chris joined.
  8. Emma: Dom might be coming on short term.

    • Josh: Swiss based developer coming on (Oleg)
  9. Minigroup Updates (Brief round table, only raise urgent discussion points, 10 mins)

    • HIC
      • Elwood: talking to Alison et al. about what they want/need.
        • Emma: are we going to get concrete requirements? Hope so.
      • Simon: planning for the next few months, Alison workflow with real project data
    • Model
      • Andrew: review of model vs database
      • Will: Em?
      • Andrew: Em outside model? Yes.
    • Web
      • Ola: Reviewing libraries, going through the UI
      • Will: PR 62 @Josh, can it be built and more widespread testing
      • Josh: web stuff (PRs) on gretzky all other to howe (server testing) - just need a list of things to build
      • Chris: Nothing on howe at the moment, runnign web against gretsky, no server.
        • Move all web testing to gretzky, have howe as full top -> bottom testing platform
    • FS (started 15:45)
      • Colin: file with sensible paths, without entire original path, some things are broken, thumbnails on one file not multiple in an image set.
        • One thought: change import workflow, metadata on import then copy to repos. + lots more, needs simplifying.
  10. Need to consider failure scenarios and reporting these to clients.

    • Usability
      • Scott: focussing on documentation, including testing and movies analysis for screenshots. Content needs finishing.
      • J-M: using sphinx for pdf and other
      • Josh: git submodule linked from /docs -> ome-docs
      • Will: sphinx decision is made? Not completely, no.
    • Bio-Formats
  11. 16-bit data and compressing with lossless JPEG2000 it won’t be lossless

  12. i.e. pyramids won’t generate correctly. i.e. a big bug.

  13. in-progress, but not fun.

  14. Insight

    • Jean-Marie: work on having multiple groups in insight.
    • Continuing the work until the end of the sprint
    • Make a movie and show it to users.
    • If not the right track, can keep the communication layer (gateway)
  15. Satellite Update (Brief round table, only raise urgent discussion points, 10 mins)

    • Emma: not much to say. Planning underway for meeting in February.
    • Hopefully everyone is working on their goals for the meting.
    • Code to be coming from Sardinia
    • Pasteur about to employ someone (need signature from Madison)
    • Progress doing FLIM from Matlab (cF. modulo implementation. blocker)
    • Andrew: how are we presenting satellites on the webpage? Ideas?
  16. Any other business (<5 mins)

    • ome-scheduling calendar (Josh)
      • sent to nitpick
  17. can see the “OME Scheduling” calendar

    • Chris: new version of /OME (squig). synchronizing.
      • Hopefully will fix our testing of the repository.
  18. Done 15:56

Actions

* Emma: provide list of calendar people
* Emma: follow up on Dom.
* Jean-Marie: ask Peter Lipp about 7886’s file
* All: decide on new matlab version (AOCB)
* Ola: create ticket for checking new versions on QA
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