2012-01-24 Tuesday Meeting
Attending: Liza, Josh (notes), Chris, Andrew, Colin, Emma, Jean-Marie, Ola, Scott, Elwood (notes), Simon, Will, Stick (14:16), Curis (14:37)
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Housekeeping Pre-Meeting - 2pm Start
Matters Arising (<10 mins)
- Will: Reply to Manz about isUserconnected DONE post
- Ola: reply to ticket:6103 thread DONE/in progress
- Will: update attachment.zip with ann.file fix DONE post
- Chris: create mailing list
- Will: web UI talk (see talk list)
- Mark the milestones
- Jason: email the community about the deadlines
- Andrew: Update hiring button to ribbon - Done - CSS would not work on 50% of browsers, reworked using image and image-map
- Andrew: list for next week of model changes In Progress Requirment/Stories/Tasks created see #7836
- Andrew: get real cost of booths - Done - mailed to Emma
Email and Forum Review - checked at 10:55 (5 mins)
Email -
- Re: [ome-devel] OMERO-Matlab: security bug
Forums -
- Jacques2020 Insight fails to retrieve thumbnails using 4.3.3
- JakeNewman Upload/Download OME-Tiff
- Manz Re: Chgrp cli options
- Code forum review
QA -
linkID Status User/email Type Created Selected file Comment Error 4189 new m.porter@dun... Insight 4.3.3 2012 01 20 - I'm sometimes getting a messag... - 4141-4188 new k.j.z.hands@... Insight 4.3.3 2012 01 20 D - 4(fld 2 wv YFP - YFP).tif - omero.ResourceError ... 4139 new zahraa_alaya... Insight 4.3.3 2012 01 20 - - java.lang.Exception: org.... 4129-4138 new j.s.j.wilson... Insight 4.3.1 2012 01 19 ...20110119puro1-800-9_R3D_D3D.dv These files won't import. Jam... omero.ResourceError ... 4128 new unknown Importer 4.3.1-6d4b 2012 01 19 ...ivecells_efhd1ybx_01_05_R3D.dv - omero.ResourceError ... 4126 new jacques.pecr... Insight 4.3.3 2012 01 17 - Saving a comment on an other u... java.lang.Exception: org.... 4125 new unknown Web 4.3.3-ice3 2012 01 16 - - Traceback (most recent ca...
Agenda - 2:30pm Start
Accepting minutes from last meeting
Introduction to Chris MacLeod and Liza Unson (5 mins)
Sprint Bug Report (10 mins)
Talk by Curtis: Hackathon Updates (45 mins )
Glencoe Update (Brief 5 Mins)
Minigroup Updates (Brief round table, only raise urgent discussion points, 10 mins)
- HIC
- Model
- Web
- FS
- Usability
- Bio-Formats
Satellite Update (Brief round table, only raise urgent discussion points, 10 mins)
Any other business (<5 mins)
- ome-scheduling calendar (Josh)
Notes
Attending
- Liza, Josh (notes), Chris, Andrew, Colin, Emma, Jean-Marie, Ola, Scott, Elwood (notes), Simon, Will, Stick (14:16), Curis (14:37)
Notes: Housekeeping Pre-Meeting - 2pm Start
Matters Arising (<10 mins)
- Will: Reply to Manz about isUserconnected DONE post
- Ola: reply to ticket:6103 thread DONE/in progress
- Will: update attachment.zip with ann.file fix DONE post
- Chris: create mailing list TABLED for AOCB
- Will: web UI talk (see talk list) CANCELLED/TABLED
- Mark the milestones DONE Jean-Marie marked the date on the milestone page.
- Jason: email the community about the deadlines PENDING
- Andrew: Update hiring button to ribbon - Done - CSS would not work on 50% of browsers, reworked using image and image-map
- Andrew: list for next week of model changes In Progress Requirment/Stories/Tasks created see #7836
- Andrew: get real cost of booths - Done - mailed to Emma
Email and Forum Review - checked at 10:55 (5 mins)
Email -
- Re: [ome-devel] OMERO-Matlab: security bug
Forums -
- Jacques2020 Insight fails to retrieve thumbnails using 4.3.3
- JakeNewman Upload/Download OME-Tiff IN-PROGRESS by Chris
- Manz Re: Chgrp cli options
-
Code forum review
- licencing queries PRIVATE MESSAGE by Chris
QA -
linkID Status User/email Type Created Selected file Comment Error 4189 new m.porter@dun... Insight 4.3.3 2012 01 20 - I'm sometimes getting a messag... - 4141-4188 new k.j.z.hands@... Insight 4.3.3 2012 01 20 D - 4(fld 2 wv YFP - YFP).tif - omero.ResourceError ... 4139 new zahraa_alaya... Insight 4.3.3 2012 01 20 - - java.lang.Exception: org.... 4129-4138 new j.s.j.wilson... Insight 4.3.1 2012 01 19 ...20110119puro1-800-9_R3D_D3D.dv These files won't import. Jam... omero.ResourceError ... 4128 new unknown Importer 4.3.1-6d4b 2012 01 19 ...ivecells_efhd1ybx_01_05_R3D.dv - omero.ResourceError ... 4126 new jacques.pecr... Insight 4.3.3 2012 01 17 - Saving a comment on an other u... java.lang.Exception: org.... 4125 new unknown Web 4.3.3-ice3 2012 01 16 - - Traceback (most recent ca...
Done: 14:21
Notes - 2:30pm Start
Accepting minutes from last meeting
- DONE
Introduction to Chris MacLeod and Liza Unson (5 mins)
- Chris, aka “Stick”
- Chris: helping Chris with sys admin
- Liza: elvis’ daughter, redesign JCB and website
Sprint/Bug Report (10 mins)
Define bug limit (>=100) after which we need a week of bug fixing?
- J-M: When we reach 100 need to spend a couple of days bringing it down again
- Pull requests in by ½ sprint to give time for review process
- @Josh & @Colin: added Section on ReleaseProcess page (on trac) with best practice for reviewing
-
Chris: discussion on Monday on web/python side
- By Monday / Tuesday to have them open
- J-M: consider merging one from will related to 4-3-4 hot fixes
Copyright PR 71
- Josh: Andrew’s simple but need clarification. 1. not update the files, andrew updated the visible year for the user
- touched a lot of files updating the year, not needed until the file is modified as a general rule.
- Andrew: thought that josh was doing something in the build to make sure the lines were preseent and had the right year, so that everything had the right year
Josh: not yet, the check is a regex, doesn’t look for 2012, just for a ‘format’ dont have to be that strict. Global syntax refactoring may be an opportunity to do that.
J-M: remember to update the template locally for when you create a new file. * Andrew: Search showed ones with the range, updated those effected.
Version numbers. [PR (https://github.com/openmicroscopy/openmicroscopy/pull/67)
- Josh: any vetoes?
- Josh: After tags version numbers will change
- Ola: ticket to make sure QA works with version number changes
Bug numbers: 49 closed in last week, (77 tickets closed in total), 82 bugs remaining (5 blockers, 8 critical)
- Josh: bug numbers inflated by a bit due to bio-format related issues synching
-
Josh: ant-test command in PR related to bioformats.
- after synching from madison to necromancer
Talk by Curtis: Hackathon Updates (45 mins) started 14:37
- ImageJ2 Presentation Hackaton
- Focus on interoperability between projects
- Knime (KNIP, Image Processing), Icy, Ome, Bioformats
- 13 slides done at 15:23
-
Comments/Questions
-
Chris: multiple versions of imglib git. What should one be writing against?
- Curtis: Ignore ImgLib1 (first 1-7 iterations).
- In repo, split code into 2. Couldn’t agree to just get rid of ImgLib1.
-
Chris: documentation was sum of code + imglib benchmarks
- master plan? resources are based on ImgLib1
- no release based on ImgLib2
- Curtis: plan is that it has to get better
- Beta of ImgLib2 with ImageJ2 is February (hard)
- Curtis will be doing the releases (like mvn)
- Some documentation on fiji wiki; some good javadoc in the interfaces
- Need more and guidance; less of a clear plan. Don’t know who and when.
- Chris: fairly powerful now, makes sense to make use of it, if it is maintainable and documented.
-
Chris: strip out ImgLib1 javadoc? and links to mpicbg, etc.
- Curtis: better documentation, and better labelling of the POMs.
- Chris: Max Planck sorts to the top of the list.
-
Chris: find lot of the names are easier in ImgLib1
- Curtis: last ditch time to rename
-
Chris: multiple versions of imglib git. What should one be writing against?
Glencoe Update (Brief 5 Mins) started 14:35
- Emma: Liza and Chris joined.
Emma: Dom might be coming on short term.
- Josh: Swiss based developer coming on (Oleg)
Minigroup Updates (Brief round table, only raise urgent discussion points, 10 mins)
-
HIC
-
Elwood: talking to Alison et al. about what they want/need.
- Emma: are we going to get concrete requirements? Hope so.
- Simon: planning for the next few months, Alison workflow with real project data
-
Elwood: talking to Alison et al. about what they want/need.
-
Model
- Andrew: review of model vs database
- Will: Em?
- Andrew: Em outside model? Yes.
-
Web
- Ola: Reviewing libraries, going through the UI
- Will: PR 62 @Josh, can it be built and more widespread testing
- Josh: web stuff (PRs) on gretzky all other to howe (server testing) - just need a list of things to build
-
Chris: Nothing on howe at the moment, runnign web against gretsky, no server.
- Move all web testing to gretzky, have howe as full top -> bottom testing platform
-
FS (started 15:45)
-
Colin: file with sensible paths, without entire original path, some things are broken, thumbnails on one file not multiple in an image set.
- One thought: change import workflow, metadata on import then copy to repos. + lots more, needs simplifying.
-
Colin: file with sensible paths, without entire original path, some things are broken, thumbnails on one file not multiple in an image set.
-
HIC
Need to consider failure scenarios and reporting these to clients.
-
Usability
- Scott: focussing on documentation, including testing and movies analysis for screenshots. Content needs finishing.
- J-M: using sphinx for pdf and other
- Josh: git submodule linked from /docs -> ome-docs
- Will: sphinx decision is made? Not completely, no.
-
Bio-Formats
- Melissa: heads-up
-
Usability
16-bit data and compressing with lossless JPEG2000 it won’t be lossless
i.e. pyramids won’t generate correctly. i.e. a big bug.
in-progress, but not fun.
Insight
- Jean-Marie: work on having multiple groups in insight.
- Continuing the work until the end of the sprint
- Make a movie and show it to users.
- If not the right track, can keep the communication layer (gateway)
Satellite Update (Brief round table, only raise urgent discussion points, 10 mins)
- Emma: not much to say. Planning underway for meeting in February.
- Hopefully everyone is working on their goals for the meting.
- Code to be coming from Sardinia
- Pasteur about to employ someone (need signature from Madison)
- Progress doing FLIM from Matlab (cF. modulo implementation. blocker)
- Andrew: how are we presenting satellites on the webpage? Ideas?
Any other business (<5 mins)
-
ome-scheduling calendar (Josh)
- sent to nitpick
-
ome-scheduling calendar (Josh)
can see the “OME Scheduling” calendar
-
Chris: new version of /OME (squig). synchronizing.
- Hopefully will fix our testing of the repository.
-
Chris: new version of /OME (squig). synchronizing.
Done 15:56
Actions
* Emma: provide list of calendar people
* Emma: follow up on Dom.
* Jean-Marie: ask Peter Lipp about 7886’s file
* All: decide on new matlab version (AOCB)
* Ola: create ticket for checking new versions on QA