Personal tools
  • We're Hiring!

You are here: Home Community Minutes Conference Calls 2011 2011-09-22 Thursday Meeting

2011-09-22 Thursday Meeting

Attending: Colin, Melissa, Ola, Josh, Chris, Will, Simon, Elwood, Jean-Marie, Andrew, Carlos (14:32)

Agenda

Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

  1. Accepting minutes from last meeting

  2. Matters Arising (<10 mins)

    • Everyone: push branches to github for Thursday
    • Melissa: imagej password issue. DONE
  3. Glencoe Update

  4. Minigroup Updates

    • HIC
    • Model: Modulo and Big images in OME-TIFF
    • Training material: status
    • Documentation: status
    • 4.3.2.x required. Strategy
  5. Email and Forum Review - checked at (5 mins)

    • Email -

      • Wood, Christopher [ome-users] Omero ImageJ plugin
      • Leon Kolchinsky [ome-users] Error (EXTERNAL IP): /webadmin/load_drivespace/
    • Forums -

    • QA -
      link

      ID  Status  User/email  Type    Created Selected file   Comment Error
      3981    new b.n.melgert@... Importer 4.3.2-8fc9 2011 09 21  ...Cd1 - 2011-07-28 10.54.29.ndpi   Importing a big ndpi filr (50M...   omero.ResourceError s...
      3978    new lem@stowers.... Insight 4.3.0   2011 09 13  7th YY1 and 8th Ies2.l2d    This file was generated by LiC...
      
  6. Any other business (<5 mins)

Attending

* Colin, Melissa, Ola, Josh, Chris, Will, Simon, Elwood, Jean-Marie, Andrew, Carlos (14:32)

Notes

  1. Accepting minutes from last meeting

  2. Matters Arising (<10 mins)

    • Everyone: push branches to github for Thursday
      • Andrew didn’t have anything to push
      • Simon: didn’t push to OME, but have other repos
      • Will thinks: makes it a lot visible
      • Simon: easier for people to contribute code
      • Josh: there is a lots of options we could mentiond, Will had a lot of question, for example how to open repository to work with Ola. It will be successful if Ola will be able to push to your branch. You are giving her a permissions to collaborate across entire repository. All your branches, You trust her!
      • Will: git page would be useful.
    • Melissa: imagej password issue. DONE
  3. Glencoe Update

    • Chris: important thing is that Josh and Carlos made a good progress on search things on JCB, this will be merged to current branches.
    • Josh: need round table, to decide when to bring it over. I have a list of things on paper, will put them in the story.
  4. Minigroup Updates

    • HIC
      • Simon: put up ticket 6838 on unique identifier mapping
      • Want to turn that into code for review this sprint




    • Model: Modulo and Big images in OME-TIFF
      • J-M: proposal came last Friday. Allow people to put various type of data without affecting model. Long email answer from Curtis.
      • Andrew: providing additional support for 6-7 dimensions.
      • Andrew: if we’re announcing to the list, we need feedback before we’ve made it public.
      • Josh: is there any further discussion, what is next step?
      • J-M: main concern was, if there is a lot of work on Bio-Format we will go for it later on.
      • Josh: We need to have agreement across the team.
      • J-M: should have a discussion Monday, Tuesday at the latest. We will send Curtis an email to clarify what is the intention of work.
      • Chris: if we decide to change our mind, there is nothing wrong.
  5. Big images in OME-TIFF

    • Andrew: had discussion with Jean-Marie, Josh, Melissa

    • https://www.openmicroscopy.org/site/community/minutes/minigroup/ome-xml-meetings/2011.09.21-big-images-ome-tiff

    • Andrew: had structural annotation defining with the tiff file. It is annotation which will not be uploaded to the server.

      • Another discussion tomorrow afternoon.
    • Training material: status

      • Scott: day 1 images are being uploaded to the website. Ready for review probably at the end of the day. Scott will send an email. It is only on plone, with the pages from Jerome’s course.
      • I think would be better if page is editable. I will assign particular pages to individual.
      • J-M: day 2 created pages for Matlab, python, Java. We are trying to get those exercises. We noticed some missing sections, we will update those pages as we go. We should have it done early next week.
      • Will: need to make sure that the remote desktop is working.
      • Scott: I sent a request to Jonathan Monk for Remote Desktop for the course.
      • Will: the sooner we get it the better.
      • Chris: questions from J. Monk. Can we install on those workstations? Wiped nightly so that could be difficult.
    • Scott sent the details, which included the statement that machines get wiped clean nightly. Can we install on those workstations anything? It starts to fall apart if we have to install software everyday.

    • Will: are they going to use they own server using webstart?

  6. Chris: they may not have permissions to do anything based on the email, so be aware.

    • Chris: Is going to talk to Jonathan about setup

    • Chris: tutorial info is ok, though?

      • Will: Yes, but more eyes on it would be good.

      • J-M: we will share with couple of people, comments welcome. We will organize as we go.

  7. Documentation: status

    • Jean-Marie: few movies done today; several more to do. Only half have been ass. Are people ok with doing movies?
      • Josh: Everyone’s movies are marked? I am fine with other movies being assigned to me. If you work on something put your name on it.
      • Colin: I can take more 1-2 tomorrow.
      • J-M: will assign movies to few more people. Andrew put the page how to make movie.
      • Andrew: if you have pieces of movies, just make sub folder and put them there. Andrew is going help with merging.
      • Ola: access to Adobe Premier? That works quite well. Andrew: no.
  8. Andrew

  9. J-M can we sort docs for Tuesday, then we start finalizing training materials.

  10. Melissa: I do not have any material to do movies. There is nothing specific for this release.

    • 4.3.2.x required. Strategy
      • There are requirements for: ImageJ, Export patch, WebAdmin, LDAP.
      • Also a github pull request (See Melissa’s suggestion on acknowledgement)
      • J-M: do we want to make bug fixes release? Josh noticed some issues.
      • Chris: should we have 4.3.3 milestone and assign tickets there?
      • Josh: the big question is naming, 4.3.3 sounds good.
      • J-M: we can;t put more then discussed issues, 4-5 items
      • Chris: lets discuss and freeze it.
  11. Email and Forum Review - checked at (5 mins)

    • Email - * Wood, Christopher [ome-users] Omero ImageJ plugin * Leon Kolchinsky [ome-users] Error (EXTERNAL IP): /webadmin/load_drivespace/ * Will: Ongoing. You get that error with no images, but perhaps something else as well. * Pass on to Ola. * Andrew: did you replay to him , or cc list? We haven’t received anything.

      • Josh: do we want to replay to those post and point people to 4.3.3 milestone.
        • Ok either way but stress “short release”
    • Forums - * Re: 4.3.2 - 2008 - IIS - Web setup errors * Re: 4.3.2 Export * OMERO 4.3.2 ImageJ Plugin - Image title contains password

      • Semantic type (under model)
        • See: http://openmicroscopy.org/community/viewtopic.php?f=15&t=755
        • J-M: because we are doing documentation, it might be worth to put the link and make it more accessible. Maybe some diagram. From the Norwich training, as soon as I understand model, then I know how to get such and such information about image, etc.
      • Code forum review - no pending posts
    • QA -
      link

      ID Status User/email Type Created Selected file Comment Error 3981 new b.n.melgert@... Importer 4.3.2-8fc9 2011 09 21 ...Cd1 - 2011-07-28 10.54.29.ndpi Importing a big ndpi filr (50M... omero.ResourceError s... 3978 new lem@stowers.... Insight 4.3.0 2011 09 13 7th YY1 and 8th Ies2.l2d This file was generated by LiC...

    • 3978 - J-M: is old, there might be missed file.

    • Melissa is going to get File from Peter(?) currently is difficult to solve the problem.

  12. Any other business (<5 mins)

    • Chris: Janelia meeting (Bio-Image Informatics)
      • Number of people using 1 or more of our components.
      • 16 posters and at least 8 were using our tools or had planned to do so.
      • During many of the talks, there were planned or existing OMERO integration.
      • Most of people does not post to list, they use tools in production env. South Africa - screens, Stowers - clinical data,
      • We are getting great update.
    • contributing code
      • Continue to put names of people who submit link/patch.
      • On OmeroProcess page.
      • when we review script we should update that.
      • We should acknowledge people who we collaborate with, and help.

Action items

* J-M: send email to Curtis for scheduling discussion
* J-M: assign remaining video tickets. Everyone finish them for Tuesday.
* Josh: create/organize a 4.3.3 milestone (BUGS-ONLY!)
* Ola: look at the Leon K. email thread.
Document Actions