2011-01-20 Thursday Meeting
Attending: Brian, Scott, Andrew, Chris, Ola, Will, Melissa, Josh, Carlos, Donald, Colin, Jason, Jean-Marie
Jason has to teach at 2pm so we will meet on Thursday at 3pm this week only.
Agenda
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Accepting minutes from last meeting
Matters Arising (<10 mins)
- Everyone: evaluate git-flow for next Tuesday
- Everyone: Review Scott's google docs, provide feedback on quick questions to ask users
- Everyone: Large backlog of bugs. Look at them and clean up.
- Everyone: please update google documentation spreadsheet with status of your pages
- Andrew: document (under /team?) of how to mark "deprecated"
- Carlos: looking at big images in Web
- Chris: Add Scott to omero-team email
- Chris & Josh: start migration to git
- Josh: update docs on bridges
- Josh: send out git announcment/feedback email
- CellProfiler & Datasets
- Nightshade upgrade: issue with ROI manipulation. Require client server upgrade
Sprint Update (10 mins)
Glencoe Update (10 mins)
Email and Forum Review - checked at (5 mins)
Email -
- Mark Woodbridge - Re: [ome-users] Timeout for server-side scripts
Forums -
QA -
linkID Status User/email Type Created Selected file Comment Error 3156 new unknown Insight 4.2.2 2011 01 20 - Trying to remove comment java.lang.Exception: Abno... 3155 new i.porter@lif... Insight 4.2.2 2011 01 19 - deleting a subset of ROIs that... java.lang.Exception: org.... 3154 new unknown Insight 4.2.2 2011 01 19 - - java.lang.Exception: org.... 3149 new ben@biobus.o... Insight 4.2.2 2011 01 17 - Hi! I'm having trouble with t... - 3148 new tanjh@bii.a-... Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3147 new tanjh@bii.a-... Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3146 new unknown Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3145 new unknown Insight 4.2.0 2011 01 17 - Exporting thumbnails java.lang.Exception: java... 3141 new ben@biobus.o... Web 4.2.2-r871 2011 01 14 - Hi guys! This is Ben from the ... - 3080 new n.y.patel@du... QA 2010 12 16 - - - 3074 new n.hattersley... Insight 4.2.1 2010 12 13 - projecting files - was doing m... java.lang.Exception: org.... 3072 new glyn.nelson@... Importer 4.2.2-r871 2010 12 13 ...i_composite_flatrainbowRGB.jpg was a largish jpg that failed java.lang.RuntimeExceptio... 3071 new glyn.nelson@... Insight 4.2.2 2010 12 13 - trying to change the colour on... java.lang.Exception: org....
Any other business (<5 mins)
Notes
Minutes from last week
- No comments
Matters Arising (<10 mins)
-
Everyone: evaluate git-flow for next Tuesday
-
Git status
- Now set up, fairly stable
- BF needs to set up still
- Trac setup to work with it
- Hudson setup will take some time
- Need to discuss what the build names will be - currently a SHA1
-
Chris: A few hickups on setup, but now resolved
- Branch developer not working right now (missing IV files, blah blah blah)
-
Git training tomorrow morning?
- 9:30 meeting approved
- JMB: Perhaps gitflow as a framework
-
Git status
-
Everyone: Review Scott's google docs, provide feedback on quick questions to ask users
- Jean-Marie: do you need more feedback? Using during session tomorrow?
- Scott: made recommended changes.
-
Needs to confirm the policy for the QA feedback, which users to send info too?
- Chris: Initially approach folks on the mailing list before the QA feedback users
-
Everyone: Large backlog of bugs. Look at them and clean up
- Was 27 bugs reported, fixed a few, some added. Need to clear the backlog
- JMB: Lets move some of them to the next sprint to get rid of the backlog
-
Everyone: please update google documentation spreadsheet with status of your pages
- Moving along, some people done.
- Andrew: document (under /team?) of how to mark "deprecated" (DONE)
-
Carlos: looking at big images in Web
- Donald will update his stuff today
- Chris: Add Scott to omero-team email (PENDING)
- Chris & Josh: start migration to git (IN PROGRESS)
- Josh: update docs on bridges (PENDING)
- Josh: send out git announcment/feedback email (WAITING FOR FEEDBACK)
-
CellProfiler & Datasets
- Josh will forward the related email to the team
-
Would be nice if we can send some test data to Adam F.
- Is this something we want to do long term?
-
Donald: Has been talking to Adam since before December, but doesn't have data
- Melissa: Did send some public data to user
- JMB: Did we want to do a collaboration phonecall with CellProfiler and include Adam?
-
Nightshade upgrade: issue with ROI manipulation. Require client server upgrade
- User pointed out a problem with ROIs that needs upgrade
-
JMB: Has 4.2.3-DEV working with fix, do we want to upgrade offically? or more testing?
- Chris: We should be ok to just do it
- Jason: Big help, a few users here stuck
- Conclusion: Release to internal 'testing' users
-
Everyone: evaluate git-flow for next Tuesday
Sprint Update (10 mins)
-
round table
- Chris: not much
- Andrew:
-
Brian: docs
- starting on summary page this week (~TOC)
- Will: some of my pages are out of date but still have some relivance
- Josh: marked some pages as 'core' others as 'wikiword' (low priority)
- Brian: looking at something similar to the Django document 'launch' page
- Ola: Still reviewing with Will on refactoring methods
-
Will: working on iQuery/Container service along with Ola
- Do we need to alter the container service to change owners?
-
Ola: Maybe we could have some options to flag for different user details?
- Josh: From the DB perspective low overhead to do that
-
waiting on walk through with Carlos re: selenium tests
- when is next perfect moment?
- 15 minutes after meeting
-
Jason: all of web work (#3649, #3797, #3299) done in this iteration?
- Ola: don't think selenium tests (#3299) done
- Carlos: These will be updated as needed
- Carlos: issues with merge due to changes in method signatures
- OmeroPy/src/omero/gateway/init.py shouldn't change without discussions among web team
- Next stage is to move more generic methods in gateway/init.py
- Ola: Refactoring should be done, selenium going, ...
-
Will: Does the wider team want a discussion about over arching issues?
- Chris: discuss Thursday for next sprint?
-
Jean-Marie:
- activity mostly testing and getting import in insight
- planning a video after this iteration to show what's available
- also an explanation of how Jean-Marie & Scott are working to get phases of work out into other groups
-
JM/Donald: processing
- Jean-Marie: text files to embed in Java & Web client
- Donald managed to get all of Processing hooked up
- Not sure to embark on that at the moment
- Test viewer only at the moment
-
Josh
- Moved all tickets to correct spot in sprint
- Plan is work on hudson so its green and lean
- Can probably help out Colin for big image services or elsewhere
-
General points
-
JMB: We need to do something about our current bugs (almost 50) this sprint (either fix or move forward)
- Also make sure everyone puts things into 'active' if you are currently working on a ticket
-
Jason: counting tickets v. counting hours
- are we roughly 40%?
-
JMB: worse than 40/60 - some tickets longer then 1 day
- Think about moving some of tickets to next sprint
-
Chris: Some things are in a story and are showing up but shouldn't - will have to remove them
- Stories should be 'spritless'
- Let's review after meeting
-
Jean-Marie:
- Goal is to have enough detail in tickets so someone can see what functionality is coming from whiteboard
-
JMB: We need to do something about our current bugs (almost 50) this sprint (either fix or move forward)
-
round table
Glencoe Update (10 mins)
Email and Forum Review - checked at (5 mins)
Email -
-
Mark Woodbridge - Re: [ome-users] Timeout for server-side scripts
- Chris/Josh: On top of this
-
Mark Woodbridge - Re: [ome-users] Timeout for server-side scripts
Forums -
-
bug in insight?
- JMB: problemato techniko with forums, will repond after meeting
-
beginners and baby-beginners
- Will discuss this on Tuesday in more detail
- Andrew responding
-
Re: Querying the external XML file (written by OMERO.editor)
- Josh: in-progress
-
Re: Tagging ScreenPlateWell
-
JMB: Will check this work and we might have a bug/workflow issue.
- May need some HCS invesitation and followup with Scott
- May need more structure then a simple reply
- Josh: We may need to change how thing are recorded (not just one way) to make the display in insight work better
- JMB: Will follow up with forum once Scott + JMB have a plan
-
JMB: Will check this work and we might have a bug/workflow issue.
-
[Other Forum email re: BF batch conversions with Jergen]
- Chris: Need a way to do batch level converts with BF convert
- Melissa will get back to user re: this
-
Andrew: people need a clearer way to stuff XML into a TIFF and back out
- Melissa: We have a gui tool for this, maybe command line, will check
- Chris: This might be a good pattern to record in the BF wiki
- Will: User is really just created ome-tiffs to get them into OMERO
- Jason: Sounds similar to something another user wanted to do
- Josh: Using ImageJ as batch processing tool?
-
bug in insight?
QA -
link- Andrew: there's a set of much older ones (August)
QA -
linkID Status User/email Type Created Selected file Comment Error 3156 new unknown Insight 4.2.2 2011 01 20 - Trying to remove comment java.lang.Exception: Abno... 3155 new i.porter@lif... Insight 4.2.2 2011 01 19 - deleting a subset of ROIs that... java.lang.Exception: org.... 3154 new unknown Insight 4.2.2 2011 01 19 - - java.lang.Exception: org.... 3149 new ben@biobus.o... Insight 4.2.2 2011 01 17 - Hi! I'm having trouble with t... - 3148 new tanjh@bii.a-... Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3147 new tanjh@bii.a-... Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3146 new unknown Insight 4.2.0 2011 01 17 - - java.lang.Exception: org.... 3145 new unknown Insight 4.2.0 2011 01 17 - Exporting thumbnails java.lang.Exception: java... 3141 new ben@biobus.o... Web 4.2.2-r871 2011 01 14 - Hi guys! This is Ben from the ... - 3080 new n.y.patel@du... QA 2010 12 16 - - - 3074 new n.hattersley... Insight 4.2.1 2010 12 13 - projecting files - was doing m... java.lang.Exception: org.... 3072 new glyn.nelson@... Importer 4.2.2-r871 2010 12 13 ...i_composite_flatrainbowRGB.jpg was a largish jpg that failed java.lang.RuntimeExceptio... 3071 new glyn.nelson@... Insight 4.2.2 2010 12 13 - trying to change the colour on... java.lang.Exception: org....
Other Business
- Josh: Re processes, we need Scott to go over various command-line tools to develop a better workflow for these
Action Items
- Josh: add ticket about build names
- Chris: update developer pages on OME.org site for new GIT urls
- Everyone: Go through the bug backlog (see report generated by Josh)
- Chris: Add Scott to omero-team email
- Donald: Get Big images work done (for Carlos?)
- Josh: send PM from forums to nitpick.
- Organize conference call during ImageJ hackathon. Invite Adam?
- Chris: backup DB and upgrade nightshade
- Everyone: After meeting, evaluate your tickets in sprint
- Carlos: Get together with Will for Selenium tests