2010-06-10 Thursday Meeting
Attending: Andrew, Colin, Brian, Chris, Josh, Ola, Jean-Marie, Will, Donald, Melissa
Agenda
Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)
Accepting minutes from last meeting
Matters Arising (<10 mins)
- Andrew: will email everyone with what he feels the new values in the XSD should be.
- Brian/Chris: Test new metadata-rich formats to see if the new changes in BF are OK.
- Josh will commit the config changes immediately following the meeting
- Andrew: Contact Kees' lab about their light sheet microscopy setup before Paris.
OMERO Release Update
- final pre-Paris DB: RC10 or 4.2.0?
Email and Forum Review - checked at (5 mins)
link to last 7 days open tickets
| All | Importer Comment | Importer Bug | Insight Comment | Insight Bug | Test Engine Bug | Web Bug | QA Bug |
ID Status User/email Type Created Selected file Comment Error
2483 new jason@lifesc... Insight 4.2.0 2010 06 10 - Not sure where to file this: ... -
2478 new unknown Insight 4.1.1 2010 06 09 - reproducible now. tried to log... java.lang.Exception: Abno...
2477 new unknown Insight 4.1.1 2010 06 09 - had just entered username and ... java.lang.Exception: Abno...
2476 new unknown Insight 4.1.1 2010 06 09 - trying to connect to a remote ... java.lang.Exception: Abno...
2472 new unknown Web 4.2.0-DEV 2010 06 04 - - Traceback (most recent ca...
2471 new jason@lifesc... Importer 4.2.0-DEV 2010 06 04 ...as_01(2009-08-26_19-24-59).mea importing flex file that usual... java.lang.RuntimeExceptio...
2470 new jason@lifesc... Insight 4.2.0 2010 06 04 - Loading thumbs for another use... -
2466 new columbus.hel... Insight 4.1.1 2010 06 03 - - java.lang.Exception: org....
2465 new m.posch@dund... Insight 4.1.1 2010 06 02 - ROI intensities java.lang.Exception: Abno...
- AOCB (<5 mins)
Notes
Accepting Minutes:
- Accepted
Matters Arising:
- Andrew is in the middle of these changes.
-
Brian/Chris/Will/Jean-Marie: Still in the middle of rich metadata file testingß.
- We should also see what useful metadata is in files but not in OMERO.
- To preserve old permsisions when upgrading: copy over old 'etc/grid/config.xml' then run 'bin/omero config' upgrade.
- Andrew is on schedule to meet up with Kees' lab tomorrow.
Release Update:
- Chris/Melissa: Some tickets need to be reviewed. OME-TIF and OME-XML should be fixed with Andrew's change.
-
Color Change to XSD:
- Chris: Can't be 4 Billion
- Andrew doesn't see a clean upgrade path for folks if we change it.
- Not too bad if we don't swap the byte order (RGBA->ARGB)
-
Bug fixing
- Web & insight: A few bugs, no big crashes, mostly workflow/useability.
- Donald (Matlab/Cellprofiler): Currently working on matlab to make cellprofiler work against 4.2 and upload ROI
- Jason: Quite solid. As a tester, many states of things (permissions, etc.)
-
Josh: HCS updated but populate ROIs script not updated.
- HCS releated things will need to be tested/adjusted again before 4.2.
-
Pre-Paris Database:
-
Josh: Any last minute changes needed to schema? If not, do we want to do the final database?
- Jean-Marie: Depends on testing? Might be risky before Paris?
-
Chris has noticed on nightshade that as plane info increases, we seem to be getting slower.
- Maybe some uniques in the DB missing that could speed things up?
- Color changes?
- Sounds like (based on upcoming changes) we should wait till after Paris.
-
Josh: Any last minute changes needed to schema? If not, do we want to do the final database?
-
Perhaps another QA build after tomorrow's changes
- Get latest stylesheet in (should be done tomorrow before noon).
- Any last minute client changes.
- Josh will be spending time on the automated tests ("HUDSON GREEN") - how the populate_roi issue was found
Email/Forum:
- Reviewed: Folks will look at the ones listed.
Paris:
- Most things ready. Need pamplets printed. Needs one more piece of information before printing.
-
Do we need a strategy meeting before hand? (Yes, this is Friday afternoon)!
- Josh will have to catchup Monday (perhaps at the Italian place).
- Just going to use the Crief poster.
-
Server at Paris: Will is offering to use his and has all his data setup.
-
Chris: Will have lots of laptops anyways.
-
Chris: Will have lots of laptops anyways.
* Andrew: Add SPIM to experiment type!
* Chris: Donald can't see Squig. Please fix!