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You are here: Home Community Minutes Conference Calls 2010 2010-06-10 Thursday Meeting

2010-06-10 Thursday Meeting

Attending: Andrew, Colin, Brian, Chris, Josh, Ola, Jean-Marie, Will, Donald, Melissa


Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

  1. Accepting minutes from last meeting

  2. Matters Arising (<10 mins)

    • Andrew: will email everyone with what he feels the new values in the XSD should be.
    • Brian/Chris: Test new metadata-rich formats to see if the new changes in BF are OK.
    • Josh will commit the config changes immediately following the meeting
    • Andrew: Contact Kees' lab about their light sheet microscopy setup before Paris.
  3. OMERO Release Update

    • final pre-Paris DB: RC10 or 4.2.0?
  4. Email and Forum Review - checked at (5 mins)

    • Email - b.gerritsen@ - [ome-users] Cellprofiler 2.0 support, m.woodbridge - [ome-users] Deleting OMERO.web shares
    • Forums - Overwrite metadata link, Locking Issue link, Multiple images in OME-TIFF (followup question) link
    • QA -

link to last 7 days open tickets

| All | Importer Comment | Importer Bug | Insight Comment | Insight Bug | Test Engine Bug | Web Bug | QA Bug |
ID  Status  User/email  Type    Created Selected file   Comment Error
2483    new jason@lifesc... Insight 4.2.0   2010 06 10  -   Not sure where to file this: ...    -
2478    new unknown Insight 4.1.1   2010 06 09  -   reproducible now. tried to log...   java.lang.Exception: Abno...
2477    new unknown Insight 4.1.1   2010 06 09  -   had just entered username and ...   java.lang.Exception: Abno...
2476    new unknown Insight 4.1.1   2010 06 09  -   trying to connect to a remote ...   java.lang.Exception: Abno...
2472    new unknown Web 4.2.0-DEV   2010 06 04  -   -   Traceback (most recent ca...
2471    new jason@lifesc... Importer 4.2.0-DEV  2010 06 04  ...as_01(2009-08-26_19-24-59).mea   importing flex file that usual...   java.lang.RuntimeExceptio...
2470    new jason@lifesc... Insight 4.2.0   2010 06 04  -   Loading thumbs for another use...   -
2466    new columbus.hel... Insight 4.1.1   2010 06 03  -   -   java.lang.Exception: org....
2465    new m.posch@dund... Insight 4.1.1   2010 06 02  -   ROI intensities java.lang.Exception: Abno...
  1. AOCB (<5 mins)


  1. Accepting Minutes:

    • Accepted
  2. Matters Arising:

    • Andrew is in the middle of these changes.
    • Brian/Chris/Will/Jean-Marie: Still in the middle of rich metadata file testing├č.
      • We should also see what useful metadata is in files but not in OMERO.
    • To preserve old permsisions when upgrading: copy over old 'etc/grid/config.xml' then run 'bin/omero config' upgrade.
    • Andrew is on schedule to meet up with Kees' lab tomorrow.
  3. Release Update:

    • Chris/Melissa: Some tickets need to be reviewed. OME-TIF and OME-XML should be fixed with Andrew's change.
    • Color Change to XSD:
      • Chris: Can't be 4 Billion
      • Andrew doesn't see a clean upgrade path for folks if we change it.
      • Not too bad if we don't swap the byte order (RGBA->ARGB)
    • Bug fixing
      • Web & insight: A few bugs, no big crashes, mostly workflow/useability.
      • Donald (Matlab/Cellprofiler): Currently working on matlab to make cellprofiler work against 4.2 and upload ROI
      • Jason: Quite solid. As a tester, many states of things (permissions, etc.)
    • Josh: HCS updated but populate ROIs script not updated.
      • HCS releated things will need to be tested/adjusted again before 4.2.
    • Pre-Paris Database:
      • Josh: Any last minute changes needed to schema? If not, do we want to do the final database?
        • Jean-Marie: Depends on testing? Might be risky before Paris?
        • Chris has noticed on nightshade that as plane info increases, we seem to be getting slower.
          • Maybe some uniques in the DB missing that could speed things up?
          • Color changes?
      • Sounds like (based on upcoming changes) we should wait till after Paris.
    • Perhaps another QA build after tomorrow's changes
      • Get latest stylesheet in (should be done tomorrow before noon).
      • Any last minute client changes.
      • Josh will be spending time on the automated tests ("HUDSON GREEN") - how the populate_roi issue was found
  4. Email/Forum:

    • Reviewed: Folks will look at the ones listed.
  5. Paris:

    • Most things ready. Need pamplets printed. Needs one more piece of information before printing.
    • Do we need a strategy meeting before hand? (Yes, this is Friday afternoon)!
      • Josh will have to catchup Monday (perhaps at the Italian place).
    • Just going to use the Crief poster.
    • Server at Paris: Will is offering to use his and has all his data setup.
      • Chris: Will have lots of laptops anyways.
* Andrew: Add SPIM to experiment type!
* Chris: Donald can't see Squig. Please fix!
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