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You are here: Home Community Minutes Conference Calls 2010 2010-03-16 Tuesday Meeting

2010-03-16 Tuesday Meeting

Attending:Brian, Ola, Josh, Donald, Jean-Marie, Chris, Scott, Colin, Andrew, Carlos, Melissa


Remember: Agenda must be complete (with estimated times) on the day before the meeting. Any additions after that must go at the bottom (AOCB)

  1. Accepting minutes from last meeting

  2. Matters Arising (<10 mins)

    • Jason: By next Tuesday put up a page with Paris topics for discussion
  3. ASCB Image Library: Carlos's presentation (45 mins)

  4. More topics for the Tuesday Presentation Schedule

  5. AOCB (<5 mins)


  • Matters arising

    • Jean-Marie contacted Jerome, who will be coming on the week of the 19th of April.
    • Next two presentations:
      • Chris/Melissa & Ola.
      • Wait until beginning of April for scripting.
      • Presentation from Jerome?
    • Jason didn't put up preliminary program or Paris meeting (@he will)
      • Bob Murphy is coming and will be giving a presentation (location proteomics)
      • Knime will be presenting
      • ...but how do we communicate what all we've done
        • point them to movies (start by end of May?)
        • highlight demos
        • discussing process
  • ASCB Image Library

    • quick overview of something things that have been done
    • "state" of an image stored as a particular dataset
      • "public", "annotator inbox", "flagged", "unfinished", ...
    • images are submitted to head annotator before being accepted
    • only one user working on an image at a time
    • rendering: single per image. saving default as projection
    • annotations consist of XML linked as a CommentAnnotation
    • questions
      • Jean-Marie: what's the metadata from the file that they are looking to change?
        • The metadata that is captured will not change
        • "PixelSize" should be auto-filled, and doesn't change the original
      • Jason: they also have the facility to annotate origianal metadata now
      • Chris: pixel sizes and channels are the two most important features. Mostly they are rounding values or adjusting measurement units.
      • Jean-Marie: cF. if user changes a channel for publication, wants that to be stored in database
      • Jean-Marie: Rendering settings (can the user have his own?)
        • Need to solve the problem for permissions (how to have rendering settings in read-only group)
        • Chris: for JCB we decided multiple rendering settings are too confusing
        • Jean-Marie: we need to be able to temporarily change the group permissions to attach rendering settings
        • Jason: If the group is read only it should hqve one original rendering setting. if the group is read/link, it should allow multiple rendering settings.
  • AOCB

    • QA build for insight up (Permissions)
      • Another one coming with the READ-ONLY / READ-LINK changes
      • Chris: thumbnails should be fixed now
      • Any web changes?
    • New 4.1.2 QA client build has been created
      • new bioformats
      • few small server bugs

Action Items

  • Jason: finished the preliminary Paris program
  • Jean-Marie: Contact Jerome to finalize his meeting
  • Donald: Contact Josh about anonimization.
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