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You are here: Home Community Minutes Conference Calls 2009 2009-10-29 Thursday Meeting

2009-10-29 Thursday Meeting

Notes

  • Graffle

    • Overlays

      • Josh: masks going in pytables
      • Chris: working. things garbled.
        • code in importer working partially correctly
        • disabled in importer
      • Melissa: indicies fix just went in
        • only masks with BinData
        • indices aren't reused
      • Donald: code to show them, but not tested. (3-4 weeks ago)
        • haven't seen server code
        • need to avoid client/server API issues
      • Few Problems:
        • querying: is table accessible without ROIs?
        • how to get only for single image.
        • no OMEROGateway changes. need to update pojos.
        • memory issues (measurement tool is 2D) * server-side? split-view, too? * who adjusts RE?
      • Update on Friday?
      • on 4.1 branch? ... long dicussion ...
    • 64 bit (josh)

      • vs2008 express / scons issue
      • trunk on 64bit machine probably broken.
      • need a couple of hours
    • performance (josh)

      • working on scalability
    • spw on web

      • work on annotations
      • still experimenting
      • will install on warlock or mage for testing
      • committed to trunk? hold off until we have branches sorted.
    • server-side rois

      • discussed above
    • interactive scripts

      • split-view script
      • Jean-Marie working on UI
      • hopefully something to run by end of the week
      • issues uploading scripts to the server: one line of import
      • Brian: changes to documentation to get scripts running locally
        • need work on non-mac platforms.
        • go through documentation again tomorrows.
    • spw in insight

      • looks great: field view, heatmap thing, strip of fields, ...
      • see email from J-M
    • codegen

      • see referenced tickets
      • about a day behind
      • ...but, handlers, regex for enums, etc. at bioformats level
        • no more passing strings!
      • next phase: start getting metadata stores to work with
      • new bf package for retrieving enumerations (with tests & regex matching)
    • beta 4.1 bugs

      • most bf bugs have already been fixed
      • importer log can now be optionally uploaded
      • importer cli hosed in trunk
      • shutdown order race conditions
      • fixes with client animations (conc. modification)
      • problem of annotating wells fixed in insight
      • brian: added large file size check on bug upload
  • model

    • some fixes for generating abstract types
    • some other problems with multiple paths
  • emails / forums

    • install issues seem to be up-to-date
    • ome-xml validation: needs to be re-written to understand 2009-09
      • in general, need to discuss support for latest schema in OMERO
  • scott

    • user comment: documentation on ImageJ install (postdoc)
      • first time imagej user
      • docs are poor; assume previous knowledge
      • movie & feature list? (one for usage but not installation)
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