2009-10-29 Thursday Meeting
Notes
Graffle
Overlays
- Josh: masks going in pytables
-
Chris: working. things garbled.
- code in importer working partially correctly
- disabled in importer
-
Melissa: indicies fix just went in
- only masks with BinData
- indices aren't reused
-
Donald: code to show them, but not tested. (3-4 weeks ago)
- haven't seen server code
- need to avoid client/server API issues
-
Few Problems:
- querying: is table accessible without ROIs?
- how to get only for single image.
- no OMEROGateway changes. need to update pojos.
- memory issues (measurement tool is 2D) * server-side? split-view, too? * who adjusts RE?
- Update on Friday?
- on 4.1 branch? ... long dicussion ...
64 bit (josh)
- vs2008 express / scons issue
- trunk on 64bit machine probably broken.
- need a couple of hours
performance (josh)
- working on scalability
spw on web
- work on annotations
- still experimenting
- will install on warlock or mage for testing
- committed to trunk? hold off until we have branches sorted.
server-side rois
- discussed above
interactive scripts
- split-view script
- Jean-Marie working on UI
- hopefully something to run by end of the week
- issues uploading scripts to the server: one line of import
-
Brian: changes to documentation to get scripts running locally
- need work on non-mac platforms.
- go through documentation again tomorrows.
spw in insight
- looks great: field view, heatmap thing, strip of fields, ...
- see email from J-M
codegen
- see referenced tickets
- about a day behind
-
...but, handlers, regex for enums, etc. at bioformats level
- no more passing strings!
- next phase: start getting metadata stores to work with
- new bf package for retrieving enumerations (with tests & regex matching)
beta 4.1 bugs
- most bf bugs have already been fixed
- importer log can now be optionally uploaded
- importer cli hosed in trunk
- shutdown order race conditions
- fixes with client animations (conc. modification)
- problem of annotating wells fixed in insight
- brian: added large file size check on bug upload
model
- some fixes for generating abstract types
- some other problems with multiple paths
emails / forums
- install issues seem to be up-to-date
-
ome-xml validation: needs to be re-written to understand 2009-09
- in general, need to discuss support for latest schema in OMERO
scott
-
user comment: documentation on ImageJ install (postdoc)
- first time imagej user
- docs are poor; assume previous knowledge
- movie & feature list? (one for usage but not installation)
-
user comment: documentation on ImageJ install (postdoc)