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You are here: Home Community Minutes Conference Calls 2009 2009-09-11 OME Group Conference Call

2009-09-11 OME Group Conference Call

Attending:

Agenda

  • ASCB

  • 4.1

    • Release process : fast & furious , slow & frustrating? Schedule?
    • Freeze candidate : When? Testing at Imperial
    • Testing systems-- importer and metadata-validator
    • testing of QA
    • preliminary email to lists?
    • permissions
    • import
  • OME specification-- requests for simplicity, digests, API, etc.

Notes

  • ASCB

    • final rooming list by the 1st of October
    • initial could have been 1st of Sept.
    • @Jason does for Monday
    • special travel parents must be in soon
    • everyone expect ola will be going
    • leaving early? not really.
      • (i.e. plan on staying until wed 5, poss. evening)
      • sending people home early?
  • 4.1 (via diagram)

    • validator finished.
    • webadmin updated with enums
    • db upgrade done
    • confocal metdata: working away
    • sending email to lists on the proposal (j-m updates ticket)
    • xslt: everything produced and testing?
      • mostly. some weird bugs left.
      • proper way to hook in the XSLT to get things in right order
      • Curtis: going to do that today.
    • rois
      • moving forward.
      • testing out the pytables today
      • roi parsing disabled inside importer
      • differed until end. (where does it run?)
      • inserts are VERY slow. (35 mins for one plate)
      • @speed is the next key thing other than parsing flex/incell measurements
      • Curtis: how queryable do the ROIs have to be?
        • Moving ROIs to other storage?
        • several options for optimization.
      • next week
        • need to import and display them first (overlays)
        • then when do we do optimizations?
        • then flex/incell
        • then we should have a good idea of speed.
    • permissions
      • 4 of ~12 tests done. should be able to finish beginning of week
      • done Monday/Tuesday.
    • directory import
      • things going well.
      • needs testing
      • passing off to DropBox
      • Josh importing shortly (today)
    • dropbox
      • should be Monday for testing
      • Jean-Marie: Windows? Everything working?
        • Still filename spaces
        • needs testing.
    • Moving down: permissions gui (webadmin), codegen, FLIM (pieta gone),
      • cont'd: annotation counts (UI issue),
    • Untackeled:
      • OpenGL
        • Frans suggested new technologies
        • ZVTM: not the way forward.
        • SWT/GIS
      • Permissions
        • Josh: should be able to work on it next week
        • would like to have all the green tests working
        • Jason: anything else from validator/QA? * getting test-engine fixed on hudson (with new system) * Jason: getting things passed off properly * Jean-Marie: evaulating on Wednesday meeting.
      • Exporter
        • service is in place. metadata won't be there until post code-gen
      • ImageJ
        • will be fixed for release. (but not necessarily all options)
      • Bioformats
        • Pushing the bioformats writing API
        • number of people that would like to use this
        • roadblocks: validation issue and simplicity
        • things to do: * add redundancy to model where it makes sense * add a simplification API
        • now starting to get feedback
        • talking to people to get a simplified version
    • testing sessions
      • starting it at end of next week or week thereafter
      • Chris leaving ~28th for Boston. Need to get framework in place.
      • Starting on the week of the 22nd. (an hour per week)
      • realistic? (ambitions, etc.)
        • Jason write to list (this weekend?) highlighting what is (not) in 4.1
        • stating a date?
        • movies during the testing?
    • freeze for oct. 1?
      • giving it to Cambridge & Imperial
      • send email "making progress"
      • set release date on friday
      • talking about the testing
      • adding more to files.txt (dv/lsm)
      • fixing any tests.
      • good way to talk to the community
      • (not polished yet)
      • updating tickets??? @Everyone for next week.
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