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You are here: Home Community Minutes Conference Calls 2009 2009-06-26 OME Group Conference Call

2009-06-26 OME Group Conference Call

Attending: Brian, Carlos, Colin, Curtis, Andrew, Jean-Marie, Josh, Melissa, Chris, Ola, Will

Agenda

  • Website

    • FAQ
  • 4.0.4

    • status
  • 4.1

    • Report - Group A:
    • Report - Group B:
  • Misc

    • Outstanding emails & forum posts:
    • Videos

Notes

  • Website

    • Chris gives rss links to Andrew for phpBB
    • Enough FAQ questions of good quality? (By next Friday!)
    • Donald made movies. Need processing. Andrew publishes
  • 4.0.4

    • Waiting for LSM problem. Should be fixed.
    • Also some DV fixes.
    • Dundee to test
    • account for Jean-Marie? Curtis: yup.
  • Group A

    • successful demo on Wed.
    • uploading a snapshot to let user cancel
    • upload an .ini file from client
    • working on some more page flows
    • integration with test-engine & hudson
    • Curtis: in addition to ratings, all the sets-of-properties
  • Group B

    • focusing on the model.
    • should be done with the review
    • went well. now working on implementation.
    • Andrew going to Imperial on Lifetime in the model
    • Any questions from Loci? (Spectral lifetime is most critical)
  • Curtis meeting report

    • integration ITK could be very valuable
    • heavily into medical imaging and just getting into microscopy (was a workshop)
    • MA-NIC (like "OME" - kit of several different things)
    • very modular: VTK, ITK, all C++ (BSD) developed by 'kitware'
    • Also have a journal for all algorithms
    • ITK is already N dimensional
    • plugin infrastructure for IO
    • other tools: xnat (similar to OMERO, but REST)
    • mistake to not use these tools
    • relationship to farsight: making ITK biologist friendly
    • links
      • http://www.farsight-toolkit.org/wiki/OMERO_IMAGE_DATABASE
      • http://code.google.com/p/wrapitk/
      • http://www.insight-journal.org/browse/publication/85
      • http://www.na-mic.org/Wiki/index.php/SoftwareInventory
  • outstanding emails/forums

    • Alex Sossick: Jean-Marie will reply
    • Chekki: Josh will reply
    • Karol: installing OMERO
  • Videos

    • Donald did two
    • Chris will start on Monday
  • Possible install at Durham (thanks to a talk from Jason)

  • bioformats

    • AWT issues on Mac
    • Any reference in library screws up on Mac (main thread)
    • working on making "grep java.awt" return ""
    • Adding "BufferedImageReader". Reasonable? Yes.
    • Q: refactoring for ImageJ? next on list.
      • got carried away cleaning away the plugins
      • one class to clean: Importer.java
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