2009-06-26 OME Group Conference Call
Attending: Brian, Carlos, Colin, Curtis, Andrew, Jean-Marie, Josh, Melissa, Chris, Ola, Will
Agenda
Website
- FAQ
4.0.4
- status
4.1
- Report - Group A:
- Report - Group B:
Misc
- Outstanding emails & forum posts:
- Videos
Notes
Website
- Chris gives rss links to Andrew for phpBB
- Enough FAQ questions of good quality? (By next Friday!)
- Donald made movies. Need processing. Andrew publishes
4.0.4
- Waiting for LSM problem. Should be fixed.
- Also some DV fixes.
- Dundee to test
- account for Jean-Marie? Curtis: yup.
Group A
- successful demo on Wed.
- uploading a snapshot to let user cancel
- upload an .ini file from client
- working on some more page flows
- integration with test-engine & hudson
- Curtis: in addition to ratings, all the sets-of-properties
Group B
- focusing on the model.
- should be done with the review
- went well. now working on implementation.
- Andrew going to Imperial on Lifetime in the model
- Any questions from Loci? (Spectral lifetime is most critical)
Curtis meeting report
- integration ITK could be very valuable
- heavily into medical imaging and just getting into microscopy (was a workshop)
- MA-NIC (like "OME" - kit of several different things)
- very modular: VTK, ITK, all C++ (BSD) developed by 'kitware'
- Also have a journal for all algorithms
- ITK is already N dimensional
- plugin infrastructure for IO
- other tools: xnat (similar to OMERO, but REST)
- mistake to not use these tools
- relationship to farsight: making ITK biologist friendly
-
links
- http://www.farsight-toolkit.org/wiki/OMERO_IMAGE_DATABASE
- http://code.google.com/p/wrapitk/
- http://www.insight-journal.org/browse/publication/85
- http://www.na-mic.org/Wiki/index.php/SoftwareInventory
outstanding emails/forums
- Alex Sossick: Jean-Marie will reply
- Chekki: Josh will reply
- Karol: installing OMERO
Videos
- Donald did two
- Chris will start on Monday
Possible install at Durham (thanks to a talk from Jason)
bioformats
- AWT issues on Mac
- Any reference in library screws up on Mac (main thread)
- working on making "grep java.awt" return ""
- Adding "BufferedImageReader". Reasonable? Yes.
-
Q: refactoring for ImageJ? next on list.
- got carried away cleaning away the plugins
- one class to clean: Importer.java