2009-04-09 OMERO Conference Call
Agenda
4.0.1
- Tagging
Stories finished?
- As a developer, I can store ROIs on the server #1305,#1306,#1307
- As a a developer, I can use OpenGL from the viewer
- As developers, we need to have one common gateway for web/litz in python
- As a user, I can use visualizer 5D with my images in ImageJ x.y.z
- As a user, I want to be able to delete SPW linked files
- As a user, I can view my fields relative to the origin/correct values for col.
- As a user, I can ONLY import into SPW OR PDI
- As a developer, I want hudson to build native applications for Windows (EXE4J)
- As a sysadmin, I can deploy easily on Windows (configurable dir, working web/indexer)
- As a user, I want to be able to import any supported single file format from FS from Mac over Samba
- As a user, I can import DV files with their logs (naming convention/wait window)
Stories for next iteration?
- Movies and demo for SPW
Rois
- See email
- Any thing that needs to be discussed for work to progress next week?
Attending
- Donald, Ola, Colin, Carlos, Chris, Meslissa, Brian
Notes
4.0.1
-
Import:
- Floating point for OMX
- Semi-support for Experiment
- @Melissa discusses WiscScan OME-TIF files with Curtis
-
FS
- OME-TIFs added. Waits for complete set of files.
- DV +/- DV.LOG (within 30 secs., configurable)
- Windows seems to be a go. Needs more testing, files & file names
-
Server
- Major issues fixed, mostly due to User v. System settings
-
Web
- Ola very happy.
-
Insight
- Archive fix. Probably done tomorrow by Jean-Marie.
- pixels-original-file-map hasn't changed.
-
Builds
- Server hudson builds look fine.
- Chris looks at EXE builds from hudson tomorrow.
-
Import:
Stories in Iteration 1
- As a developer, I can store ROIs on the server #1305 DONE, #1306, #1307 NOT DONE
- As a a developer, I can use OpenGL from the viewer NOT DONE
- As developers, we need to have one common gateway for web/litz in python NOT DONE (docs/tests)
- As a user, I can use visualizer 5D with my images in ImageJ x.y.z NOT DONE
- As a user, I want to be able to delete SPW linked files DONE
- As a user, I can view my fields relative to the origin/correct values for col. DONE
- As a user, I can ONLY import into SPW OR PDI. DONE
- As a developer, I want hudson to build native applications for Windows (EXE4J) NOT DONE
- As a sysadmin, I can deploy easily on Windows (configurable dir, working web/indexer) DONE
- As a user, I want to be able to import any supported single file format from FS from Mac over Samba NOT DONE
- As a user, I can import DV files with their logs (naming convention/wait window) DONE
Stories for iteration 2
- Movies and demo for SPW
- OpenGL: Have a viewer (needs to be integrated - no lens or rois) , have thumbnails (needs integration will have to wait)
- ROIs #1306
- MPEG export
- tutorial copying settings
- ROI file formats: SC1000, LSM in-progress
- Importing GELs? Metadata (wavelengths) for Licor. Need datasets! @Brian asks Paul
- FS over samba on mac
- FS testing other file formats
- Developer can see which file formats working
- Test deployments: Chris gets things running over the weekend. (Ola perms for VMWare server)
- Community / Forum:
-
Gateway & viewer
- Process ok? Yeah, just need to get good at the refactoring
- Not going into 4.0.1
-
testing?
- Put it somewhere in OmeroPy/test/integration/whatever
- If you need a fixture, do it.
- docs: OmeroPy please.
- @Ola & Carlos discuss testing, etc.
- Generating pretty HTML from inteface? Automatic process?
- django: webviewer, webcore
-
Investigation
-
Sharing Objectives? On client or on server? What's the identifier?
- As first stab, what kind of identifier can we hope to correlate from DVs?
- Picking up multiple files with different objectives from same scope, etc.
-
Sharing Objectives? On client or on server? What's the identifier?
ROIs
- Choice on storage? Not really. Lots to explore.
- Adding methods to bf interface
- Test it and then look into upgrading schema
OmeroPy gateway integration
- Are we doing it right so far?
- Unit testing (it's already done, but from the django app and using weblitz' test db)
- Documentation
- Django specific stuff, where does it go?