Agenda

• 4.0.1

  • Tagging

• Stories finished?

  • As a developer, I can store ROIs on the server #1305,#1306,#1307
  • As a a developer, I can use OpenGL from the viewer
  • As developers, we need to have one common gateway for web/litz in python
  • As a user, I can use visualizer 5D with my images in ImageJ x.y.z
  • As a user, I want to be able to delete SPW linked files
  • As a user, I can view my fields relative to the origin/correct values for col.
  • As a user, I can ONLY import into SPW OR PDI
  • As a developer, I want hudson to build native applications for Windows (EXE4J)
  • As a sysadmin, I can deploy easily on Windows (configurable dir, working web/indexer)
  • As a user, I want to be able to import any supported single file format from FS from Mac over Samba
  • As a user, I can import DV files with their logs (naming convention/wait window)

• Stories for next iteration?

  • Movies and demo for SPW

• Rois

  • See email
  • Any thing that needs to be discussed for work to progress next week?

Attending

• Donald, Ola, Colin, Carlos, Chris, Meslissa, Brian

Notes

• 4.0.1

  • Import:
    • Floating point for OMX
    • Semi-support for Experiment
    • @Melissa discusses WiscScan OME-TIF files with Curtis
  • FS
    • OME-TIFs added. Waits for complete set of files.
    • DV +/- DV.LOG (within 30 secs., configurable)
    • Windows seems to be a go. Needs more testing, files & file names
  • Server
    • Major issues fixed, mostly due to User v. System settings
  • Web
    • Ola very happy.
  • Insight
    • Archive fix. Probably done tomorrow by Jean-Marie.
    • pixels-original-file-map hasn't changed.
  • Builds
    • Server hudson builds look fine.
    • Chris looks at EXE builds from hudson tomorrow.

• Stories in Iteration 1

  • As a developer, I can store ROIs on the server #1305 DONE, #1306, #1307 NOT DONE
  • As a a developer, I can use OpenGL from the viewer NOT DONE
  • As developers, we need to have one common gateway for web/litz in python NOT DONE (docs/tests)
  • As a user, I can use visualizer 5D with my images in ImageJ x.y.z NOT DONE
  • As a user, I want to be able to delete SPW linked files DONE
  • As a user, I can view my fields relative to the origin/correct values for col. DONE
  • As a user, I can ONLY import into SPW OR PDI. DONE
  • As a developer, I want hudson to build native applications for Windows (EXE4J) NOT DONE
  • As a sysadmin, I can deploy easily on Windows (configurable dir, working web/indexer) DONE
  • As a user, I want to be able to import any supported single file format from FS from Mac over Samba NOT DONE
  • As a user, I can import DV files with their logs (naming convention/wait window) DONE

• Stories for iteration 2

  • Movies and demo for SPW
  • OpenGL: Have a viewer (needs to be integrated - no lens or rois) , have thumbnails (needs integration will have to wait)
  • ROIs #1306
  • MPEG export
  • tutorial copying settings
  • ROI file formats: SC1000, LSM in-progress
  • Importing GELs? Metadata (wavelengths) for Licor. Need datasets! @Brian asks Paul
  • FS over samba on mac
  • FS testing other file formats
  • Developer can see which file formats working
  • Test deployments: Chris gets things running over the weekend. (Ola perms for VMWare server)
  • Community / Forum:
  • Gateway & viewer
    • Process ok? Yeah, just need to get good at the refactoring
    • Not going into 4.0.1
    • testing?
      • Put it somewhere in OmeroPy/test/integration/whatever
      • If you need a fixture, do it.
      • docs: OmeroPy please.
      • @Ola & Carlos discuss testing, etc.
      • Generating pretty HTML from inteface? Automatic process?
      • django: webviewer, webcore
  • Investigation
    • Sharing Objectives? On client or on server? What's the identifier?
      • As first stab, what kind of identifier can we hope to correlate from DVs?
      • Picking up multiple files with different objectives from same scope, etc.

• ROIs

  • Choice on storage? Not really. Lots to explore.
  • Adding methods to bf interface
  • Test it and then look into upgrading schema

• OmeroPy gateway integration

  • Are we doing it right so far?
  • Unit testing (it's already done, but from the django app and using weblitz' test db)
  • Documentation
  • Django specific stuff, where does it go?