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You are here: Home Community Minutes Conference Calls 2008 2008-11-15 Project-Wide Conf Call

2008-11-15 Project-Wide Conf Call

Agenda

  • OMERO Summaries

    • Beta3.2 Release Status
      • Server
      • Insight
      • Importer
      • WebClient
      • Editor
      • FS
    • Beta 4 Status
      • Database version numbers [Chris]
      • Rendering engine model names [Chris]
  • Closing all tickets (with revision numbers please!)

  • Whats up for the next 2 week cycle?

  • ASCB Updates (if needed)

  • Bio-Formats

    • Units, etc. whose job is it? [Chris]
    • The Joys of Metadata
    • Ice, Jace/JNI, etc. [Curtis]
  • WND-CHARM

    • Usage
    • specific application domains we should be targeting?
    • Next steps?
  • FARSIGReview and visit to RPI [Kevin]

Notes

  • In attendance: Colin, Curtis, Iggy, Josh, Kevin, Melissa, Brian, Chris, Will, Ola, Jean-Marie, Donald

  • 3.2 release

  • Web stuff ready to go

  • Server just has one thing left to change (but will be ready by early next week)

  • Importer ready to go

  • Should be able to release 3.2 middle of next week

  • Tickets ready to go

  • 4.0 release

  • One problem with the wrong model object being used that needs to be fixed by chris

  • Metadata is still behind and is behind (sounds like something broke in the model so no extra metadata is importing)

  • ASCB

  • Rooms booked, flights booked

  • Metadata Units

  • Needs to be consistent

  • Schema needs to be more explicit since its a bit ambiguous

  • Some fields need to have a units field (defaults assumed but have an optional field to change it)

    • Perhaps a measurements unit annotation would address this?
  • Should really attach original file in omero and would be nice to be able to 'reapply metadata from original file'

  • Bio-formats

  • Curtis is going to make some JASE bindings for Bio-Formats

  • For the time being chris and brian are going to use their ice object optimizations

  • Investigate improving co-generation between bio-formats to omero

    • (keep BF metadata store and add something new for this)
  • WND-CHARM

  • Iggy's team is releasing a command line version

  • Not sure they are going to do any further integration beyond that

  • Dundee seem to be having a problem getting reproducibility between two separate plates under WND-CHARM

    • Iggy has same problem - the classifier may be too sensitive to variance
    • Dundee is fixing this with larger sample sets
  • Are you thinking of doing any further algorithm improvements

    • Looking at a few things (mRMR)
    • Also looking at some new transforms
  • FARSIGReview

  • Kevin is working on this project to bring bio-formats into a common set of tools for scientists

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