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You are here: Home Community Minutes Conference Calls 2008 2008-08-04 Omero Review Meeting

2008-08-04 Omero Review Meeting

Attending: Josh, Melissa, Chris, Ola, Will, Brian, Jason, Andrew

Agenda


  • Beta3.1 (see tickets)
    • Database upgrade for HCS
    • Delete
    • Annotations-- docs
    • Thumbnail improvements
    • MIPs?
    • Sept 1???
    • Move to nightshade for testing?

  • new website
    • Description of OMERO!!!
    • Screenshots of OMERO.editor

  • Defining Beta4
    • OMERO.fs
    • OMERO.web
    • OMERO.scripts
    • processing and analysis library
    • OMERO.importer-- upload & import, testing framework
    • OMERO.re-- faster, smarter (MIPs, lineplots, histograms)
    • OMERO.insight-- cleaning and fixing, integration of OMERO.editor, support for OMERO.scripts
    • OMERO.editor


  • Misc
    • Vacations-- notification


Notes

  • Beta3.1
    • Brian: long list (on paper; not in tickets now)
      • UI issues mostly
      • minor file formats bugs
    • jboss 4.2.2 is testing exercise
    • relaxed SPW is fine
    • histograms? Chris: don't think we're going to get that in
    • MIPs in. Engine setup, initial tests working.
    • Need to get this onto a production server
      • in 2 weeks?
      • trunk is stable except for the security changes. will be good to test those.
      • SPW
        • OMERO3A__7 should have everything
        • Importer should be fine
        • Insight should be fine
      • Anything for the data model?
        • Don't think so
        • A few new annotatable types (doesn't matter)
        • No new anntoations yet. See Beta4 and Shares.
    • - big difficulty is
    • - freeze on sep 1. with testing for next two weeks

  • Website
    • need screenshots for omero.editor
    • need better description of omero
      • not this month from jason
      • lots of sites with the clients but no server installed
        • misunderstanding about the whole thing works

  • Beta4
    • lots going into it
    • need to get these out for testing as soon as possible
    • getting django in front of users
      • problem to have them deploy it
      • sharing?
      • 2-3 weeks for smart adding
      • nothing that's not based on sharing?
        • need to decide default permissions
        • need to decide containers
      • demo server for internal playing in september?
      • major point is sharing, but lots of things that people will appreciate
    • scripting engine
      • need an elementary library of analysis routines and see how that works
      • what do we target? routine filtering? segmentation/tracking? classification?
      • differentiate between that tools that use matlab interface and those that are scripts
    • server-side uploads
      • good conversations about moving forward
      • jason will try to write up what he thinks
      • testing-framework close to done?
        • having hudson run periodically?
        • uses directory structure
        • all command-line driven
        • what directory?
    • rendering engine / thumbnailing
      • actually for 3.1
      • batch importing stuff for 3.1 as well (i.e. "faster")
    • insight
      • cleaning / fixing
      • integrating editor
      • supporting scripts?
      • blitz server?
    • editor
      • being driven by Homburg
      • arranging code and data model for move to insight
    • other?
      • binary data store pool
        • prototype in shares
        • also for rois
          • progress from Andrew.
          • Need way to convert other ROIs.
          • Need use cases
          • Andrew on vacation starting Aug 18
          • Probably get sorted beginning of Sep.
        • anywhere you need parsed data *fast*
      • default permissions
        • good to have Jean-Marie around
        • put it off to the 20th

  • vacations
    • written notice would be nice
    • so that it can get updated on Jason's calendar


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