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You are here: Home Community Minutes Conference Calls 2008 2008-06-05 Project-wide 3:45 BST

2008-06-05 Project-wide 3:45 BST

Attending: Melissa, Josh, Chris, Brian, Andrew, Ola, Colin, Donad, Jason, Kevin, Curtis

Agenda


  • June Developer's mtg
    • Agenda. Needs to be updated and finalised.


  • Bio-Formats
    • new licensing and new page
    • testing framework?
    • getting new data....
    • Current priorities

  • OMERO Server
    • Beta3.0 updates
    • Release date ~June 16

  • OME Server
    • 2.7 updates

  • Web site
    • New design, any comments, plans for progress
    • Link for new site
    • Release date. Next week?
    • Please make any final corrections


Notes


  • June Developer's meeting
    • Still to be updated by Jean-Marie and Chris
    • Cover
      • Data model / Bioformats
        • External data in OME-XML
        • Overlays in XML
        • OME-HDF : Possibly some (programming) help from the HDF group
          • Possibly a position on the grant
          • HDF group also wanted to finance a position. Nasa has some funds to move into other communities.
      • Client architecture
      • Licensing
    • Attendance
      • Saarland
      • Carus?
    • Please RSVP

  • OME-XML
    • Any issues? Not really. One already released.
    • Next release pushed to August.
    • How many contacts?
      • Three in last two months?
      • Biggest question: How to add own data to XML files?
        • Need to agree on it, write sample, and document it
    • xsd-fu should now be updated for generating from schema->model for all version
      • including the updated objective ref version

  • Bioformats
    • autogenerated java library
      • split into two jars: ome-xml.jar & ome-client.jar (OME-Perl server communication)
      • only weirdness: org.openmicroscopy would probably be kept in server jar.
    • committed OME-XML reader with new UUID concepts
    • need to work on the memory allocation. Not size of file, but a little over a plane (ASAP)
    • New formats
      • flex reader is importing some screen/plate/well
      • incell 1000 reader is also
    • licensing
      • email to be sent re: GPL
      • website already updated
    • Melissa : Bugs
      • Then support for a couple more formats over the next few weeks (
      • Some work on download plugin for ImageJ
    • New Nikon == nd2, jp2. Coverage of metadata?
      • XML block stored alongside jpeg200 data
      • All original is preserved, just not necessarily converted.
    • Testing
      • test data collection
      • integration into hudson
      • rsyc'ing it nightly?
      • move the test data to Dundee?
      • Kevin: why is connectivity so slow? Will try to get it improved
        • Team of network guys who might be able to help

  • Beta3
    • Running on production server? Monday if search is fine.
      • Upgrading is a day job
    • Have to get the videos done.
    • Looked at: OMERO.registry page. Link not for publication, but show this to people.
      • Add ImageJ plugin dot
      • Probably not the bioformats.jar
    • Screenshots in grant, since reviewers aren't supposed to visit links

  • www-dev (plone)
    • Curtis will make edits soon
    • downloads page
      • What is it trying to do?
      • Kinda ugly
      • subpages
      • Links to other sites or the actual downloads?
      • Has to stay in sync


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