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You are here: Home Community Minutes Conference Calls 2008 2008-02-15 Project-wide 3:45 GMT

2008-02-15 Project-wide 3:45 GMT

Attending:

Agenda


  • OME-XML
    • Andrew is at the doctors - sorry about the timing but I waited 3 month to get an appointment.
    • I have made the following changes to the xml
      • added ID to OME element to store a unique file identifier
      • added HashMethod to OME element
      • reworked PixelType to be PixelType and ExtendedPixelType to clarify and aid xsd-fu
      • added FilePath to TiffData
      • added Hash to Plane
      • reworked OME:Description to be xsd:string type with a language ref to match ST:Description
      • removed AML:Description and set to use OME:Description - now only in OME and ST
      • added type HashValue (currently a Hex40)
      • added type HashMethodType (enum with value "SHA1")
      • added type FileID (as LSID or UUID) - note needs regex fixed at present
      • reworked OTF to use ExtendedPixelType
      • removed Power from element Arc and Filament
    • A draft version has been added to the website (still to fix copyright dates)
    • Pending changes - missed until today as not part of any Milestone - sorry Chris
    • Not in the current changes but proposed for future
      • Remove OME::Description and just use xsd:string type.
      • Add an alternate to BinData and TiffData, perhaps NoData or ExternalData for use in metadata only files. (want to talk to companies about the use of this)
      • Move ImageRef to OME from SPW when there is direct need.
      • Fix inconsistent used of OME:Description in SPW file when next changing it.
      • Not restricting types (integer, float, string, etc.) in the model but perhaps document the assumptions made in specific database implementations .
    • I propose to release by 29th Feb but I am away next week. Back on Mon 25th.

  • Bio-Formats and OME-TIFF

  • OMERO Server
    • Beta3.0 updates
  • OME Server
    • 2.7 updates
  • Web site
    • New design
      • no progress by Andrew


Notes


  • Andrews mega list
    • extending pixeltype enumeration
    • uuids
    • look mostly like non-braking changes
    • comments soon please (within next week)

  • Curtis
    • Time spent on data browser
    • Restructing testing framework for bioformats
    • jvmlink : initial commit of package for socket communication
    • Q: XML changes in beta3? A: That's the plan
      • Freeze middle of april. Testing towards June
      • Bioformats video? Sure.
      • Alexa can provide the template

  • OMERO server
    • trying to get things together for OMERO3A__3
      • will simplify the update scripts
      • views.sql will be the default soon.
      • modelling front: Chris tries to get it to Josh soon
    • status of importer for getting data into new server
      • two small bugs
      • then should be good to go
      • looking at the 22nd for an internal test cycle
    • server logs
      • all IPs are used up for SSL sites ("bridge head firewalling")
      • archives of usage
      • all logs for five years
      • currently have at least back to january 2007
        • views, unique visits, downloads, hits, etc.
        • cvs. www. ome-xml trac
      • chris sends link
      • jul/06: 2218 downlaods (1000 are suspect in one night; bots)

  • OME server
    • Merged ST modifications into head
      • language support
      • inheritance model
    • Language support for Spanish from ESPOL

  • Necromancer is getting old
    • moving cvs resources and bugzilla over to trac?
    • no problem at all anymore.
    • none of the tools have a problem with svn anymore


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