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You are here: Home Community Minutes Conference Calls 2008 2008-01-11 Omero Review Meeting

2008-01-11 Omero Review Meeting

Attending: Alexa, Andrew, Cat, Chris, Colin, Donald, Jason, Jean-Marie, Josh, Melissa, Will

Agenda


  • In Attendance:

  • General
    • Upcoming vacations and releases
      • Brian: January 9th to the 26th
      • Chris: January 12th to 28th
      • Jason: US Meetings Jan 16 - 25
      • Donald: January 15th-ish to Febuary 1st-ish

    • Jason starts writing grant upon return. Will need figs, words ideas.

  • Status Report
    • OMERO.server
    • OMERO.insight
    • OMERO.importer
    • OMERO.webadmin
    • Scripting Engine
    • OMERO-FS
    • ome xml
    • Website changes
    • Bio-Formats

  • Beta 2.3 Notes of Interest
    • Downloads--
    • Update for REGISTRY


Action Items

  • Everyone please make sure your 3.0 tickets are up to date with what you are working on


Notes


  • General
    • Grant writing time: very annoying mode starting Feb. 1
    • Servers getting more hits
      • 20 downloads of the server
      • jason will

  • Server (Josh)
    • Annotations & Search
      • interesting for will and jean-marie
    • Delete
      • means different things to different people
      • how flexible for the user
        • site-wide configuration
        • dev
    • Windows build ticket:855
      • now works
      • may break, since we don't test it

  • Server (Chris)
    • Improving trac documentation
      • Upgrading Mac OSX packages
      • binary repositories
    • Dundee hosts should be maintainability by multiple users
    • Projections
      • Create a few projections available on mage
      • UI side can start working with them
      • so that we can test visually
      • Timeline: soon

  • Server (Alexa)
    • Working on SSL connection for LDAP
    • A bit slow; perhaps not for us
      • Why? Overhead on every call
      • Answer? Sessions.

  • Insight (Jean-Marie)
    • some clean-up post beta2.3
    • start testing beginning of next week.
    • wildcards, case sensitivity
    • viewing multiple images in same viewer
    • should be available if we push out a server patch
    • some things to make the life of the user easier
    • starts to play with search API early next week

  • Insight (Donald)
    • reworking some of ROI tool interfaces
    • using SVG tools on images (cell counting, etc.)
      • done: ~1.5 weeks
      • test builds towards the end of the month
    • move on to scripting engine after that
      • Monday talk; josh+donald
      • J-M: good example data from Michael for testing the scripting engine
      • making something that would help Anne Carpenter, etc. (module)
        • couple days work to start opening it up
        • it'd be huge

  • (aside) Multiple pixels new structure
    • Use something temporary for Beta3
    • Upgrade for Beta4
    • Similar situation to tagging
      • Something visually to understand the problematic

  • Importer
    • Brian absent
    • Melissa & new formats
      • incell --> implies work from several people to get Screen/Plate/Well in

  • OMERO.fs (Colin)
    • Playing with FS events on mac; only provide roughly what's happening
    • Examining inotify under linux
    • will contact Josh about using interfaces (email)
    • Jason handles the contractual

  • Andrew
    • OME-XML
      • Trying to get breaking changes left over from September reeady
      • Need to review some of the specific types (int/float)
    • Website
      • Following up on email to nitpick, the new website has been committed
        • Goal: greater prominence for all products
      • Generated documentation for 2003 schema to prevent SVG warnings
      • on going task: sorting through many websites, making overview, homogenizing via css
      • looking into plone instance on necromancer (permissions, editing)
      • reviewing site with Jason; adding screenshots

  • Bioformats (Melissa)
    • big commit is in
    • adding changes to OME-XML (compiles but incomplete)
    • looking for unplaced metadata
    • using OMERO?
      • unsure. Melissa has her own

  • New server version
    • fixed upgrades.url
    • run.sh fix

  • Annotations upgrade (3.0-Beta3)
    • MBL data on older systems
      • move to tagging
    • way to distinguish different sites (upgrade heuristic)?
    • must clear the CG/C table since it's leaving the UI (?)
    • may need to fiddle with tags -> descriptive annotation
    • wait 3-4 weeks before deal with upgrade
    • need to get information on what's in the table
    • secodn phase on structuring information more?

  • ProtocolEditor (Will)
    • ontology work for now finished; waiting on Phenote integration
    • interested user
    • demo for Michael

  • Please review your tickets


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