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You are here: Home Community Minutes Conference Calls 2007 2007-11-15 Project-wide 3:45 GMT

2007-11-15 Project-wide 3:45 GMT

Attending: Alexa, Andrew, Brian, Chris, Curtis, Jason, JMarie, Josh, Kevin, Will

Agenda


  • OME-XML
    • validator
    • xsd-fu (working with OME-XML in Java)
      • New API requirements from Curtis?
      • Potential usage inside OME Notes and the Protocol Editor
  • OMERO 2.2.1/2.3
    • Permanent generation bug (#834)
    • Rendering engine de-synchronization and memory leak
  • Searching
    • use cases wished
      • easy: search("Image", "name:*bob* OR description:...")
      • tough: search("ImageName:*bob* AND ImageTag"
    • questions:
      • default field? implies that the user doesn't need to add "field:..." in query
      • building a UI? need metadata for client

  • Moving OMERO towards OME Server functionality
    • use cases written over Thanksgiving
    • also requests from CMU

Action Items



Notes


  • ome-xml
    • waiting for people to complain
    • records on usage?

  • anything from improvision?

  • xsd-fu
    • ctor(parent node object)
      • typed?
      • currently only works from one schema
    • back-references (not urgent for new schema)
    • #sampleTest isn't complete
    • curtis working on generation
    • some methods missing from ome-java
    • use inside ome-notes/protocol editor
      • more methods to ask questions about hierarchy would be good
      • simplifies use of working with XML
      • certain points in hierarchy: "what fits here below instrument?"
      • also a goal of generating XML scratch from any starting point
    • should have a discussion on notes/protocol editor synergies
      • acquisition metadata vs. experimental metadata
      • for example: can you call bioformats during import to add parameters

  • cellbio
    • kevin ordered all booth stuff
    • has ilya ordered electrical?

  • OMERO 2.2.1 memory issues
    • valkyrie happy with new runline options
    • 95%-99.99%, non-monotonic
    • should we fiddle more?
      • increase heap size?
    • should be able to test new RE on Monday

  • moving OMERO towards OME server functionality
    • jason will write up, but had to run

  • searching
    • jmarie started working on UI for searching
    • will contact josh friday morning
    • "any term that comes into your head"
      • two dimensions: field and class
      • you might not know the type
      • know difference between tag and a description field, e.g.
    • within transactional boundaries
    • owner information
    • can everything be in one index
      • prohibitive
    • searching between indices
      • have to join at build time
      • can find a name somewhere
    • putting everything in one index
      • (XML) content: with everything in it
      • also: owner, group, type, tags, files(?),
    • planning
      • need to be able to tear it down
      • flexibility
      • need to reduce query-space as soon as possible

  • quotas
    • column in the password table?

  • 2.2.1
    • possibly another couple of formats
    • but we shouldn't drag it out very long


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