Hi Mark,
I have uploaded the logs for your reference.
I have also run the
- Code: Select all
omero fs images
command and the output is as follows:
- Code: Select all
# | Image | Name | FS | # Files | Size
---+-------+------+----+---------+------
(0 rows, starting at 0 of approx. 0)
Checking the output from the import process, I see this set of interesting DEBUG-level messages:
- Code: Select all
2018-12-11 22:53:54,945 601 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:2 Num: 11000 Tot: n/a File: h2sk1fk1fl1.tiff
2018-12-11 22:53:54,946 602 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:2 Num: 11100 Tot: n/a File: h1sk1fk1fl1.tiff
2018-12-11 22:53:54,946 602 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:2 Num: 11200 Tot: n/a File: h3sk1fk1fl1.tiff
2018-12-11 22:53:54,946 602 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:2 Num: 11300 Tot: n/a File: h2sk1fk1fl1.tiff
[A LOT OF SIMILAR ENTRIES LATER]
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location is not a URL
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - getParent()
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location(/mnt/disk/OMERO/raw_data/OncogenePL3_B8-G11/Images)
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location is not a URL
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - getAbsolutePath()
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location(/mnt/disk/OMERO/raw_data/OncogenePL3_B8-G11/Images/r04c09f08p73-ch1sk1fk1fl1.tiff)
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location is not a URL
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - getAbsolutePath()
2018-12-12 00:07:22,104 4407760 [ main] TRACE loci.common.Location - Location(/mnt/disk/OMERO/raw_data/OncogenePL3_B8-G11/Images/Index.idx.xml)
Please note that for this upload, our server ran out of disk space due to storing the huge debug log from the upload, so this may be reflected in the logs.
Meanwhile, I'll continue debugging with the logs. Thanks for looking into this for us!
Regards,
Frank